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    TCP1 t-complex 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 702500, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TCP1provided by VGNC
    Official Full Name
    t-complex 1provided by VGNC
    Primary source
    VGNC:VGNC:83494
    See related
    Ensembl:ENSMMUG00000012846
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TCP1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (10813473..10838296)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (160882161..160907005, complement)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene protein FAM136A pseudogene Neighboring gene PARN like ribonuclease domain containing exonuclease 1 Neighboring gene mitochondrial ribosomal protein L18 Neighboring gene small nucleolar RNA SNORA29 Neighboring gene small nucleolar RNA SNORA20 Neighboring gene acetyl-CoA acetyltransferase 2 Neighboring gene WT1 associated protein Neighboring gene uncharacterized LOC106998185 Neighboring gene U4atac minor spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent protein folding chaperone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chaperonin-containing T-complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    T-complex protein 1 subunit alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257728.1 → NP_001244657.1  T-complex protein 1 subunit alpha

      See identical proteins and their annotated locations for NP_001244657.1

      Status: PROVISIONAL

      Source sequence(s)
      JU336122
      UniProtKB/TrEMBL
      F6T521, G7MQZ9
      Related
      ENSMMUP00000016880.4, ENSMMUT00000018028.4
      Conserved Domains (1) summary
      cd03335
      Location:9 → 535
      TCP1_alpha; TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins ...

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      10813473..10838296
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015137273.2 → XP_014992759.1  T-complex protein 1 subunit alpha isoform X1

      UniProtKB/TrEMBL
      F6T521, G7MQZ9
      Related
      ENSMMUP00000016884.4, ENSMMUT00000018032.4
      Conserved Domains (1) summary
      cd03335
      Location:9 → 535
      TCP1_alpha; TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins ...
    Nucleotide Protein
    Heading Accession and Version

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