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    SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 696756, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SYNCRIPprovided by VGNC
    Official Full Name
    synaptotagmin binding cytoplasmic RNA interacting proteinprovided by VGNC
    Primary source
    VGNC:VGNC:78141
    See related
    Ensembl:ENSMMUG00000012575
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SYNCRIP in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (87592497..87628766)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (83789982..83826591, complement)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD50 Neighboring gene small nucleolar RNA SNORD50 Neighboring gene uncharacterized LOC696998 Neighboring gene uncharacterized LOC114677552 Neighboring gene sorting nexin 14 Neighboring gene 5'-nucleotidase ecto Neighboring gene uncharacterized LOC114677553

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 5'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in CRD-mediated mRNA stabilization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CRD-mediated mRNA stability complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heterogeneous nuclear ribonucleoprotein Q

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001193845.2 → NP_001180774.1  heterogeneous nuclear ribonucleoprotein Q

      See identical proteins and their annotated locations for NP_001180774.1

      Status: PROVISIONAL

      Source sequence(s)
      QNVO02000341
      UniProtKB/TrEMBL
      I0FNH0, I2CUF4
      Conserved Domains (2) summary
      TIGR01648
      Location:103 → 615
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
      cd21066
      Location:23 → 107
      NURR_hnRNPQ; NURR (N-terminal unit for RNA recognition) domain found in heterogeneous nuclear ribonucleoprotein Q (hnRNPQ) and similar proteins

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      87592497..87628766
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001089294.4 → XP_001089294.1  heterogeneous nuclear ribonucleoprotein Q isoform X3

      See identical proteins and their annotated locations for XP_001089294.1

      UniProtKB/TrEMBL
      I0FNH0, I2CUF4
      Related
      ENSMMUP00000016505.3, ENSMMUT00000017625.4
      Conserved Domains (2) summary
      TIGR01648
      Location:103 → 615
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
      cd21066
      Location:23 → 107
      NURR_hnRNPQ; NURR (N-terminal unit for RNA recognition) domain found in heterogeneous nuclear ribonucleoprotein Q (hnRNPQ) and similar proteins

    2. XM_015136874.2 → XP_014992360.1  heterogeneous nuclear ribonucleoprotein Q isoform X4

      UniProtKB/TrEMBL
      A0A1D5R700, F7FEL4, F7FEN2, H9EM89
      Related
      ENSMMUP00000056088.2, ENSMMUT00000062452.2
      Conserved Domains (2) summary
      TIGR01648
      Location:103 → 557
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
      cd21066
      Location:23 → 107
      NURR_hnRNPQ; NURR (N-terminal unit for RNA recognition) domain found in heterogeneous nuclear ribonucleoprotein Q (hnRNPQ) and similar proteins

    3. XM_015136873.2 → XP_014992359.1  heterogeneous nuclear ribonucleoprotein Q isoform X1

      UniProtKB/TrEMBL
      I0FNH0
      Conserved Domains (2) summary
      TIGR01648
      Location:103 → 592
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
      cd21066
      Location:23 → 107
      NURR_hnRNPQ; NURR (N-terminal unit for RNA recognition) domain found in heterogeneous nuclear ribonucleoprotein Q (hnRNPQ) and similar proteins

    4. XM_028846654.1 → XP_028702487.1  heterogeneous nuclear ribonucleoprotein Q isoform X2

      UniProtKB/TrEMBL
      I0FNH0
      Conserved Domains (2) summary
      TIGR01648
      Location:103 → 592
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
      cd21066
      Location:23 → 107
      NURR_hnRNPQ; NURR (N-terminal unit for RNA recognition) domain found in heterogeneous nuclear ribonucleoprotein Q (hnRNPQ) and similar proteins

    5. XM_015136876.2 → XP_014992362.1  heterogeneous nuclear ribonucleoprotein Q isoform X5

      UniProtKB/TrEMBL
      F7FEN2
      Conserved Domains (2) summary
      TIGR01648
      Location:103 → 553
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
      cd21066
      Location:23 → 107
      NURR_hnRNPQ; NURR (N-terminal unit for RNA recognition) domain found in heterogeneous nuclear ribonucleoprotein Q (hnRNPQ) and similar proteins

    6. XM_015136878.2 → XP_014992364.1  heterogeneous nuclear ribonucleoprotein Q isoform X7

      UniProtKB/TrEMBL
      H9EM88
      Conserved Domains (1) summary
      TIGR01648
      Location:5 → 459
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

    7. XM_015136877.2 → XP_014992363.1  heterogeneous nuclear ribonucleoprotein Q isoform X6

      UniProtKB/TrEMBL
      I0FNH0
      Conserved Domains (1) summary
      TIGR01648
      Location:5 → 517
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

    8. XM_015136879.2 → XP_014992365.1  heterogeneous nuclear ribonucleoprotein Q isoform X8

      Conserved Domains (1) summary
      cl25617
      Location:11 → 405
      LSM_int_assoc; LSM-interacting associated unstructured
    Nucleotide Protein
    Heading Accession and Version

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