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    PPHLN1 periphilin 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 701728, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PPHLN1provided by VGNC
    Official Full Name
    periphilin 1provided by VGNC
    Primary source
    VGNC:VGNC:76074
    See related
    Ensembl:ENSMMUG00000021735
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PPHLN1 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (41725004..41852725)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (40268362..40394293)

    Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene insulin-like growth factor 2 mRNA-binding protein 2 pseudogene Neighboring gene zinc finger CCHC-type and RNA binding motif containing 1 Neighboring gene U6 spliceosomal RNA Neighboring gene FMR1 autosomal homolog 1 pseudogene Neighboring gene prickle planar cell polarity protein 1 Neighboring gene 60S ribosomal protein L12 pseudogene Neighboring gene CDGSH iron-sulfur domain-containing protein 1 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of gene expression, epigenetic IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to heterochromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    periphilin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041764.1 Reference Mmul_10 Primary Assembly

      Range
      41725004..41852725
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015151501.2 → XP_015006987.2  periphilin-1 isoform X10

      UniProtKB/TrEMBL
      A0A1D5Q140
      Conserved Domains (1) summary
      pfam11488
      Location:223 → 285
      Lge1; Transcriptional regulatory protein LGE1

    2. XM_015151493.2 → XP_015006979.2  periphilin-1 isoform X3

      UniProtKB/TrEMBL
      A0A1D5Q140
      Conserved Domains (1) summary
      pfam11488
      Location:278 → 340
      Lge1; Transcriptional regulatory protein LGE1

    3. XM_015151497.2 → XP_015006983.2  periphilin-1 isoform X6

      UniProtKB/TrEMBL
      A0A1D5Q140
      Conserved Domains (1) summary
      pfam11488
      Location:259 → 321
      Lge1; Transcriptional regulatory protein LGE1

    4. XM_015151504.2 → XP_015006990.2  periphilin-1 isoform X13

      UniProtKB/TrEMBL
      A0A1D5Q140
      Conserved Domains (1) summary
      pfam11488
      Location:204 → 266
      Lge1; Transcriptional regulatory protein LGE1

    5. XM_015151507.2 → XP_015006993.2  periphilin-1 isoform X16

      UniProtKB/TrEMBL
      A0A1D5Q140
      Conserved Domains (1) summary
      pfam11488
      Location:204 → 266
      Lge1; Transcriptional regulatory protein LGE1

    6. XM_015151508.2 → XP_015006994.2  periphilin-1 isoform X17

      UniProtKB/TrEMBL
      A0A1D5QF20
      Related
      ENSMMUP00000046639.2, ENSMMUT00000057294.2
      Conserved Domains (1) summary
      pfam11488
      Location:278 → 353
      Lge1; Transcriptional regulatory protein LGE1

    7. XM_015151510.2 → XP_015006996.2  periphilin-1 isoform X18

      UniProtKB/TrEMBL
      A0A1D5QPV4, A0A1D5QYH7, F7E2H7, F7HRN2, H9FVL2
      Related
      ENSMMUP00000053108.2, ENSMMUT00000055344.2
      Conserved Domains (1) summary
      pfam11488
      Location:259 → 334
      Lge1; Transcriptional regulatory protein LGE1

    8. XM_015151490.2 → XP_015006976.2  periphilin-1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q140
      Conserved Domains (1) summary
      pfam11488
      Location:285 → 347
      Lge1; Transcriptional regulatory protein LGE1

    9. XM_015151495.2 → XP_015006981.2  periphilin-1 isoform X4

      UniProtKB/TrEMBL
      A0A1D5Q140
      Conserved Domains (1) summary
      pfam11488
      Location:285 → 347
      Lge1; Transcriptional regulatory protein LGE1

    10. XM_015151492.2 → XP_015006978.2  periphilin-1 isoform X2

      UniProtKB/TrEMBL
      A0A1D5Q140
      Conserved Domains (1) summary
      pfam11488
      Location:285 → 347
      Lge1; Transcriptional regulatory protein LGE1

    11. XM_015151496.2 → XP_015006982.2  periphilin-1 isoform X5

      UniProtKB/TrEMBL
      A0A1D5Q140
      Conserved Domains (1) summary
      pfam11488
      Location:266 → 328
      Lge1; Transcriptional regulatory protein LGE1

    12. XM_028829413.1 → XP_028685246.1  periphilin-1 isoform X7

      UniProtKB/TrEMBL
      A0A1D5Q140
      Conserved Domains (1) summary
      pfam11488
      Location:266 → 328
      Lge1; Transcriptional regulatory protein LGE1

    13. XM_015151498.2 → XP_015006984.2  periphilin-1 isoform X8

      UniProtKB/TrEMBL
      A0A1D5Q140
      Related
      ENSMMUP00000041752.2, ENSMMUT00000074090.2
      Conserved Domains (1) summary
      pfam11488
      Location:266 → 328
      Lge1; Transcriptional regulatory protein LGE1

    14. XM_015151500.2 → XP_015006986.2  periphilin-1 isoform X9

      UniProtKB/TrEMBL
      A0A1D5Q140
      Conserved Domains (1) summary
      pfam11488
      Location:230 → 292
      Lge1; Transcriptional regulatory protein LGE1

    15. XM_015151502.2 → XP_015006988.2  periphilin-1 isoform X11

      UniProtKB/TrEMBL
      A0A1D5Q140
      Conserved Domains (1) summary
      pfam11488
      Location:230 → 292
      Lge1; Transcriptional regulatory protein LGE1

    16. XM_015151503.2 → XP_015006989.2  periphilin-1 isoform X12

      UniProtKB/TrEMBL
      A0A1D5Q140
      Conserved Domains (1) summary
      pfam11488
      Location:211 → 273
      Lge1; Transcriptional regulatory protein LGE1

    17. XM_028829414.1 → XP_028685247.1  periphilin-1 isoform X14

      UniProtKB/TrEMBL
      A0A1D5Q140
      Conserved Domains (1) summary
      pfam11488
      Location:211 → 273
      Lge1; Transcriptional regulatory protein LGE1

    18. XM_015151506.2 → XP_015006992.2  periphilin-1 isoform X15

      UniProtKB/TrEMBL
      A0A1D5Q140
      Conserved Domains (1) summary
      pfam11488
      Location:211 → 273
      Lge1; Transcriptional regulatory protein LGE1

    19. XM_015151513.2 → XP_015006999.2  periphilin-1 isoform X19

      UniProtKB/TrEMBL
      A0A1D5Q140
      Conserved Domains (1) summary
      pfam11488
      Location:223 → 285
      Lge1; Transcriptional regulatory protein LGE1

    20. XM_015151491.2 → XP_015006977.2  periphilin-1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q140
      Conserved Domains (1) summary
      pfam11488
      Location:285 → 347
      Lge1; Transcriptional regulatory protein LGE1

    21. XM_015151494.2 → XP_015006980.2  periphilin-1 isoform X3

      UniProtKB/TrEMBL
      A0A1D5Q140
      Conserved Domains (1) summary
      pfam11488
      Location:278 → 340
      Lge1; Transcriptional regulatory protein LGE1

    22. XM_015151505.2 → XP_015006991.2  periphilin-1 isoform X13

      UniProtKB/TrEMBL
      A0A1D5Q140
      Conserved Domains (1) summary
      pfam11488
      Location:204 → 266
      Lge1; Transcriptional regulatory protein LGE1

    23. XM_028829415.1 → XP_028685248.1  periphilin-1 isoform X18

      UniProtKB/TrEMBL
      A0A1D5QPV4, A0A1D5QYH7, F7E2H7, F7HRN2, H9FVL2
      Related
      ENSMMUP00000039940.3, ENSMMUT00000046908.3
      Conserved Domains (1) summary
      pfam11488
      Location:259 → 334
      Lge1; Transcriptional regulatory protein LGE1

    24. XM_028829412.1 → XP_028685245.1  periphilin-1 isoform X3

      UniProtKB/TrEMBL
      A0A1D5Q140
      Conserved Domains (1) summary
      pfam11488
      Location:278 → 340
      Lge1; Transcriptional regulatory protein LGE1

    RNA

    1. XR_003720590.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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