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    PRDM1 PR/SET domain 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 696757, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PRDM1provided by VGNC
    Official Full Name
    PR/SET domain 1provided by VGNC
    Primary source
    VGNC:VGNC:76391
    Locus tag
    EGK_15204
    See related
    Ensembl:ENSMMUG00000021401
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PRDM1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (67095643..67119700, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (104069494..104093536, complement)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene collagen alpha-1(I) chain-like Neighboring gene U6 spliceosomal RNA Neighboring gene autophagy related 5 Neighboring gene uncharacterized LOC114677390 Neighboring gene chromatin assembly factor 1 subunit B pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone deacetylase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell fate commitment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PR domain zinc finger protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      67095643..67119700 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015137020.2 → XP_014992506.1  PR domain zinc finger protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A1D5QYV9, F7FD48
      Related
      ENSMMUP00000053241.2, ENSMMUT00000072512.2
      Conserved Domains (3) summary
      smart00317
      Location:100 → 206
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      sd00017
      Location:591 → 610
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:602 → 627
      zf-H2C2_2; Zinc-finger double domain

    2. XM_001087708.4 → XP_001087708.1  PR domain zinc finger protein 1 isoform X1

      See identical proteins and their annotated locations for XP_001087708.1

      UniProtKB/TrEMBL
      F7FD48, G7MQ03
      Related
      ENSMMUP00000028193.2, ENSMMUT00000030125.3
      Conserved Domains (5) summary
      smart00317
      Location:100 → 206
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG5048
      Location:570 → 688
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:577 → 597
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:575 → 597
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:617 → 642
      zf-H2C2_2; Zinc-finger double domain

    3. XM_015137021.2 → XP_014992507.1  PR domain zinc finger protein 1 isoform X4

      UniProtKB/TrEMBL
      F7FD48
      Conserved Domains (5) summary
      smart00317
      Location:1 → 48
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG5048
      Location:412 → 530
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:419 → 439
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:417 → 439
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:459 → 484
      zf-H2C2_2; Zinc-finger double domain

    4. XM_002803849.3 → XP_002803895.1  PR domain zinc finger protein 1 isoform X3

      UniProtKB/TrEMBL
      F7FD48
      Conserved Domains (5) summary
      smart00317
      Location:5 → 72
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG5048
      Location:436 → 554
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:443 → 463
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:441 → 463
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:483 → 508
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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