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    CARHSP1 calcium regulated heat stable protein 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 709224, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CARHSP1provided by VGNC
    Official Full Name
    calcium regulated heat stable protein 1provided by VGNC
    Primary source
    VGNC:VGNC:99498
    Locus tag
    EGK_12486
    See related
    Ensembl:ENSMMUG00000047806
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CARHSP1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (8875133..8891396, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (8872075..8886755, complement)

    Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene 4-aminobutyrate aminotransferase Neighboring gene uncharacterized LOC114674286 Neighboring gene transmembrane protein 186 Neighboring gene phosphomannomutase 2 Neighboring gene lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog Neighboring gene ubiquitin specific peptidase 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 3'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of mRNA stability IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium-regulated heat-stable protein 1
    Names
    Calcium-regulated heat-stable protein of 24 kDa
    calcium regulated heat stable protein 1, 24kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261063.2 → NP_001247992.1  calcium-regulated heat-stable protein 1

      See identical proteins and their annotated locations for NP_001247992.1

      Status: PROVISIONAL

      Source sequence(s)
      JV044493
      UniProtKB/TrEMBL
      A0A8J8YGV7, F7F6H6, G7NPL7
      Related
      ENSMMUP00000077757.1, ENSMMUT00000095546.1
      Conserved Domains (1) summary
      cd04458
      Location:63 → 128
      CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041773.1 Reference Mmul_10 Primary Assembly

      Range
      8875133..8891396 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015125581.2 → XP_014981067.1  calcium-regulated heat-stable protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8J8YGV7, F7F6H6, G7NPL7
      Related
      ENSMMUP00000055614.1, ENSMMUT00000055736.2
      Conserved Domains (1) summary
      cd04458
      Location:63 → 128
      CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...

    2. XM_028840534.1 → XP_028696367.1  calcium-regulated heat-stable protein 1 isoform X1

      Conserved Domains (1) summary
      cd04458
      Location:84 → 149
      CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...

    3. XM_015125580.2 → XP_014981066.1  calcium-regulated heat-stable protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8J8YGV7, F7F6H6, G7NPL7
      Conserved Domains (1) summary
      cd04458
      Location:63 → 128
      CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
    Nucleotide Protein
    Heading Accession and Version

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