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    SATB2 SATB homeobox 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 699151, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SATB2provided by VGNC
    Official Full Name
    SATB homeobox 2provided by VGNC
    Primary source
    VGNC:VGNC:99401
    See related
    Ensembl:ENSMMUG00000046254
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SATB2 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 12 NC_041765.1 (86366377..86556666, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (146898503..147090540)

    Chromosome 12 - NC_041765.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106997072 Neighboring gene U7 small nuclear RNA Neighboring gene uncharacterized LOC114671387 Neighboring gene uncharacterized LOC106997071 Neighboring gene selenide, water dikinase 1 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-binding protein SATB2; LOW QUALITY PROTEIN: DNA-binding protein SATB2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041765.1 Reference Mmul_10 Primary Assembly

      Range
      86366377..86556666 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015131888.2 → XP_014987374.2  LOW QUALITY PROTEIN: DNA-binding protein SATB2

      UniProtKB/TrEMBL
      A0A1D5QTX7
      Related
      ENSMMUP00000051507.2, ENSMMUT00000056752.2
      Conserved Domains (4) summary
      smart00389
      Location:614 → 671
      HOX; Homeodomain
      cd11585
      Location:60 → 155
      SATB1_N; N-terminal domain of SATB1 and similar proteins
      pfam02376
      Location:481 → 555
      CUT; CUT domain
      pfam16557
      Location:162 → 232
      CUTL; CUT1-like DNA-binding domain of SATB
    Nucleotide Protein
    Heading Accession and Version

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