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    CELF3 CUGBP Elav-like family member 3 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 716884, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CELF3provided by VGNC
    Official Full Name
    CUGBP Elav-like family member 3provided by VGNC
    Primary source
    VGNC:VGNC:70936
    See related
    Ensembl:ENSMMUG00000016952
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CELF3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (99377256..99392196)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (126220670..126235469, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114670749 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC107000927 Neighboring gene regulatory subunit of type II PKA R-subunit domain containing 1 Neighboring gene sorting nexin 27 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC114670750

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splice site recognition IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CUGBP Elav-like family member 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      99377256..99392196
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015152200.2 → XP_015007686.2  CUGBP Elav-like family member 3 isoform X1

      UniProtKB/TrEMBL
      G7MDL1
      Conserved Domains (4) summary
      PRK12323
      Location:265 → 402
      PRK12323; DNA polymerase III subunits gamma and tau; Provisional
      cd12632
      Location:64 → 139
      RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:145 → 225
      RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12639
      Location:432 → 510
      RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    2. XM_028828926.1 → XP_028684759.1  CUGBP Elav-like family member 3 isoform X2

      UniProtKB/TrEMBL
      G7MDL1
      Conserved Domains (4) summary
      PRK12323
      Location:264 → 401
      PRK12323; DNA polymerase III subunits gamma and tau; Provisional
      cd12632
      Location:64 → 139
      RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:144 → 224
      RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12639
      Location:431 → 509
      RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    3. XM_015152205.2 → XP_015007691.1  CUGBP Elav-like family member 3 isoform X6

      UniProtKB/TrEMBL
      G7MDL1
      Conserved Domains (4) summary
      cd12635
      Location:18 → 98
      RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12639
      Location:305 → 383
      RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      TIGR01661
      Location:21 → 390
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      cl17169
      Location:1 → 12
      RRM_SF; RNA recognition motif (RRM) superfamily

    4. XM_002801801.3 → XP_002801847.2  CUGBP Elav-like family member 3 isoform X3

      UniProtKB/TrEMBL
      F7CBU0, G7MDL1
      Related
      ENSMMUP00000022293.4, ENSMMUT00000023818.4
      Conserved Domains (4) summary
      cd12632
      Location:2 → 88
      RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:94 → 174
      RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12639
      Location:381 → 459
      RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      TIGR01661
      Location:9 → 466
      ELAV_HUD_SF; ELAV/HuD family splicing factor

    5. XM_015152219.2 → XP_015007705.1  CUGBP Elav-like family member 3 isoform X7

      UniProtKB/TrEMBL
      G7MDL1
      Conserved Domains (3) summary
      cd12635
      Location:17 → 97
      RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12639
      Location:304 → 382
      RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cl17169
      Location:1 → 12
      RRM_SF; RNA recognition motif (RRM) superfamily

    6. XM_015152199.2 → XP_015007685.1  CUGBP Elav-like family member 3 isoform X4

      UniProtKB/TrEMBL
      G7MDL1
      Conserved Domains (4) summary
      cd12632
      Location:2 → 88
      RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:94 → 174
      RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12639
      Location:380 → 458
      RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      TIGR01661
      Location:9 → 465
      ELAV_HUD_SF; ELAV/HuD family splicing factor

    7. XM_015152190.2 → XP_015007676.1  CUGBP Elav-like family member 3 isoform X5

      UniProtKB/TrEMBL
      G7MDL1
      Conserved Domains (4) summary
      cd12632
      Location:2 → 88
      RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:93 → 173
      RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12639
      Location:380 → 458
      RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      TIGR01661
      Location:9 → 465
      ELAV_HUD_SF; ELAV/HuD family splicing factor

    8. XM_015152209.2 → XP_015007695.1  CUGBP Elav-like family member 3 isoform X6

      UniProtKB/TrEMBL
      G7MDL1
      Conserved Domains (4) summary
      cd12635
      Location:18 → 98
      RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12639
      Location:305 → 383
      RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      TIGR01661
      Location:21 → 390
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      cl17169
      Location:1 → 12
      RRM_SF; RNA recognition motif (RRM) superfamily

    9. XM_015152231.2 → XP_015007717.1  CUGBP Elav-like family member 3 isoform X7

      UniProtKB/TrEMBL
      G7MDL1
      Conserved Domains (3) summary
      cd12635
      Location:17 → 97
      RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12639
      Location:304 → 382
      RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cl17169
      Location:1 → 12
      RRM_SF; RNA recognition motif (RRM) superfamily

    10. XM_015152226.2 → XP_015007712.1  CUGBP Elav-like family member 3 isoform X7

      UniProtKB/TrEMBL
      G7MDL1
      Conserved Domains (3) summary
      cd12635
      Location:17 → 97
      RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12639
      Location:304 → 382
      RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cl17169
      Location:1 → 12
      RRM_SF; RNA recognition motif (RRM) superfamily

    11. XM_015152212.2 → XP_015007698.1  CUGBP Elav-like family member 3 isoform X6

      UniProtKB/TrEMBL
      G7MDL1
      Conserved Domains (4) summary
      cd12635
      Location:18 → 98
      RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12639
      Location:305 → 383
      RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      TIGR01661
      Location:21 → 390
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      cl17169
      Location:1 → 12
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
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