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    HDAC9 histone deacetylase 9 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 708314, updated on 17-Aug-2024

    Summary

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    Official Symbol
    HDAC9provided by VGNC
    Official Full Name
    histone deacetylase 9provided by VGNC
    Primary source
    VGNC:VGNC:73165
    See related
    Ensembl:ENSMMUG00000011170
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See HDAC9 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (96032982..96947236, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (94097067..94848497)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene Fer3 like bHLH transcription factor Neighboring gene twist family bHLH transcription factor 1 Neighboring gene nucleophosmin pseudogene Neighboring gene uncharacterized LOC114676971 Neighboring gene U6atac minor spliceosomal RNA Neighboring gene rRNA methyltransferase 3, mitochondrial pseudogene Neighboring gene phosphoribosyl pyrophosphate synthetase 1 like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone deacetylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone deacetylase 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      96032982..96947236 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028845987.1 → XP_028701820.1  histone deacetylase 9 isoform X22

      UniProtKB/TrEMBL
      A0A5F8ALA5
      Related
      ENSMMUP00000067442.1, ENSMMUT00000079859.1
      Conserved Domains (2) summary
      cd10163
      Location:60 → 149
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
      cd11681
      Location:656 → 1033
      HDAC_classIIa; Histone deacetylases, class IIa

    2. XM_028845975.1 → XP_028701808.1  histone deacetylase 9 isoform X14

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:60 → 146
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    3. XM_028845976.1 → XP_028701809.1  histone deacetylase 9 isoform X15

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cd10163
      Location:60 → 149
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    4. XM_028845978.1 → XP_028701811.1  histone deacetylase 9 isoform X16

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:60 → 146
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    5. XM_028845963.1 → XP_028701796.1  histone deacetylase 9 isoform X7

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:60 → 146
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    6. XM_028845958.1 → XP_028701791.1  histone deacetylase 9 isoform X2

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:60 → 146
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    7. XM_028845959.1 → XP_028701792.1  histone deacetylase 9 isoform X3

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:60 → 146
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    8. XM_028845962.1 → XP_028701795.1  histone deacetylase 9 isoform X6

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cd10163
      Location:60 → 149
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    9. XM_028845957.1 → XP_028701790.1  histone deacetylase 9 isoform X1

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cd10163
      Location:60 → 149
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    10. XM_028845974.1 → XP_028701807.1  histone deacetylase 9 isoform X13

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cd10163
      Location:60 → 149
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    11. XM_028845973.1 → XP_028701806.1  histone deacetylase 9 isoform X12

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:38 → 124
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    12. XM_028845984.1 → XP_028701817.1  histone deacetylase 9 isoform X20

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:38 → 124
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    13. XM_028845971.1 → XP_028701804.1  histone deacetylase 9 isoform X11

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:38 → 124
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    14. XM_028845960.1 → XP_028701793.1  histone deacetylase 9 isoform X4

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:38 → 124
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    15. XM_028845964.1 → XP_028701797.1  histone deacetylase 9 isoform X8

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:38 → 124
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    16. XM_028845983.1 → XP_028701816.1  histone deacetylase 9 isoform X19

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cd10163
      Location:38 → 127
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    17. XM_028845969.1 → XP_028701802.1  histone deacetylase 9 isoform X10

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cd10163
      Location:38 → 127
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    18. XM_028845961.1 → XP_028701794.1  histone deacetylase 9 isoform X5

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cd10163
      Location:38 → 127
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    19. XM_015133976.2 → XP_014989462.1  histone deacetylase 9 isoform X18

      UniProtKB/TrEMBL
      A0A5F7ZSH2, F6VAD3
      Conserved Domains (1) summary
      cd10163
      Location:38 → 127
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    20. XM_028845965.1 → XP_028701798.1  histone deacetylase 9 isoform X9

      UniProtKB/TrEMBL
      F6VAD3, H9G2D8
      Conserved Domains (1) summary
      cd10163
      Location:38 → 127
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    21. XM_028845979.1 → XP_028701812.1  histone deacetylase 9 isoform X17

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cd10163
      Location:38 → 127
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    22. XM_028845986.1 → XP_028701819.1  histone deacetylase 9 isoform X21

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:38 → 124
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    23. XM_028845972.1 → XP_028701805.1  histone deacetylase 9 isoform X11

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:38 → 124
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    24. XM_028845970.1 → XP_028701803.1  histone deacetylase 9 isoform X10

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cd10163
      Location:38 → 127
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    25. XM_028845980.1 → XP_028701813.1  histone deacetylase 9 isoform X17

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cd10163
      Location:38 → 127
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    26. XM_015133978.2 → XP_014989464.1  histone deacetylase 9 isoform X20

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:38 → 124
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    27. XM_028845985.1 → XP_028701818.1  histone deacetylase 9 isoform X20

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:38 → 124
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    28. XM_028845968.1 → XP_028701801.1  histone deacetylase 9 isoform X9

      UniProtKB/TrEMBL
      F6VAD3, H9G2D8
      Related
      ENSMMUP00000014626.4, ENSMMUT00000015617.4
      Conserved Domains (1) summary
      cd10163
      Location:38 → 127
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    29. XM_028845967.1 → XP_028701800.1  histone deacetylase 9 isoform X9

      UniProtKB/TrEMBL
      F6VAD3, H9G2D8
      Conserved Domains (1) summary
      cd10163
      Location:38 → 127
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    30. XM_028845982.1 → XP_028701815.1  histone deacetylase 9 isoform X18

      UniProtKB/TrEMBL
      A0A5F7ZSH2, F6VAD3
      Related
      ENSMMUP00000068594.1, ENSMMUT00000087752.1
      Conserved Domains (1) summary
      cd10163
      Location:38 → 127
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    31. XM_028845981.1 → XP_028701814.1  histone deacetylase 9 isoform X18

      UniProtKB/TrEMBL
      A0A5F7ZSH2, F6VAD3
      Conserved Domains (1) summary
      cd10163
      Location:38 → 127
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    Nucleotide Protein
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