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    AFF2 ALF transcription elongation factor 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 700758, updated on 17-Aug-2024

    Summary

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    Official Symbol
    AFF2provided by VGNC
    Official Full Name
    ALF transcription elongation factor 2provided by VGNC
    Primary source
    VGNC:VGNC:69773
    See related
    Ensembl:ENSMMUG00000000466
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See AFF2 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) X NC_041774.1 (144523471..145022221)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) X NC_027913.1 (142213076..142715324)

    Chromosome X - NC_041774.1Genomic Context describing neighboring genes Neighboring gene HCLS1-associated protein X-1 pseudogene Neighboring gene 60S ribosomal protein L7-like 1 Neighboring gene iduronate 2-sulfatase-like Neighboring gene iduronate 2-sulfatase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables G-quadruplex RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear speck IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AF4/FMR2 family member 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041774.1 Reference Mmul_10 Primary Assembly

      Range
      144523471..145022221
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028842234.1 → XP_028698067.1  AF4/FMR2 family member 2 isoform X1

      UniProtKB/TrEMBL
      F6YQP3
      Related
      ENSMMUP00000000639.2, ENSMMUT00000000690.4
      Conserved Domains (1) summary
      pfam05110
      Location:19 → 1279
      AF-4; AF-4 proto-oncoprotein

    2. XM_015128372.2 → XP_014983858.1  AF4/FMR2 family member 2 isoform X3

      UniProtKB/TrEMBL
      F6YQP3
      Conserved Domains (1) summary
      pfam05110
      Location:19 → 1273
      AF-4; AF-4 proto-oncoprotein

    3. XM_028842235.1 → XP_028698068.1  AF4/FMR2 family member 2 isoform X2

      UniProtKB/TrEMBL
      F6YQP3
      Conserved Domains (1) summary
      pfam05110
      Location:19 → 1275
      AF-4; AF-4 proto-oncoprotein

    4. XM_002806427.3 → XP_002806473.1  AF4/FMR2 family member 2 isoform X4

      UniProtKB/TrEMBL
      F6YQP3, F6YQQ1
      Related
      ENSMMUP00000000638.3, ENSMMUT00000000689.4
      Conserved Domains (1) summary
      pfam05110
      Location:19 → 1269
      AF-4; AF-4 proto-oncoprotein

    5. XM_028842236.1 → XP_028698069.1  AF4/FMR2 family member 2 isoform X5

      Conserved Domains (1) summary
      pfam05110
      Location:18 → 949
      AF-4; AF-4 proto-oncoprotein

    6. XM_015128373.2 → XP_014983859.1  AF4/FMR2 family member 2 isoform X6

      UniProtKB/TrEMBL
      A0A1D5QWZ6
      Related
      ENSMMUP00000052576.2, ENSMMUT00000064590.2
      Conserved Domains (1) summary
      pfam05110
      Location:18 → 943
      AF-4; AF-4 proto-oncoprotein
    Nucleotide Protein
    Heading Accession and Version

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