U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ATG10 autophagy related 10 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 711835, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ATG10provided by VGNC
    Official Full Name
    autophagy related 10provided by VGNC
    Primary source
    VGNC:VGNC:70102
    Locus tag
    EGK_16649
    See related
    Ensembl:ENSMMUG00000003577
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ATG10 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (78741471..79035920)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (78725782..79063950)

    Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114678833 Neighboring gene single stranded DNA binding protein 2 Neighboring gene uncharacterized LOC114678834 Neighboring gene uncharacterized LOC114678835 Neighboring gene ATPase H+ transporting accessory protein 1 like Neighboring gene ribosomal protein S23

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables Atg12 transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in macroautophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein lipidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein modification by small protein conjugation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular anatomical structure IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ubiquitin-like-conjugating enzyme ATG10

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041759.1 Reference Mmul_10 Primary Assembly

      Range
      78741471..79035920
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028849555.1 → XP_028705388.1  ubiquitin-like-conjugating enzyme ATG10 isoform X4

      Conserved Domains (1) summary
      pfam03987
      Location:112 → 168
      Autophagy_act_C; Autophagocytosis associated protein, active-site domain

    2. XM_028849554.1 → XP_028705387.1  ubiquitin-like-conjugating enzyme ATG10 isoform X3

      Conserved Domains (1) summary
      pfam03987
      Location:112 → 175
      Autophagy_act_C; Autophagocytosis associated protein, active-site domain

    3. XM_015140352.2 → XP_014995838.1  ubiquitin-like-conjugating enzyme ATG10 isoform X1

      Conserved Domains (1) summary
      pfam03987
      Location:112 → 179
      Autophagy_act_C; Autophagocytosis associated protein, active-site domain

    4. XM_015140353.2 → XP_014995839.1  ubiquitin-like-conjugating enzyme ATG10 isoform X2

      UniProtKB/TrEMBL
      A0A5S6R949, A0A8J8XSB0, F7ESW6, G7MV69
      Related
      ENSMMUP00000004765.4, ENSMMUT00000005057.4
      Conserved Domains (1) summary
      pfam03987
      Location:12 → 207
      Autophagy_act_C; Autophagocytosis associated protein, active-site domain

    5. XM_015140355.2 → XP_014995841.1  ubiquitin-like-conjugating enzyme ATG10 isoform X2

      UniProtKB/TrEMBL
      A0A5S6R949, A0A8J8XSB0, F7ESW6, G7MV69
      Related
      ENSMMUP00000071103.1, ENSMMUT00000109070.1
      Conserved Domains (1) summary
      pfam03987
      Location:12 → 207
      Autophagy_act_C; Autophagocytosis associated protein, active-site domain

    6. XM_028849553.1 → XP_028705386.1  ubiquitin-like-conjugating enzyme ATG10 isoform X2

      UniProtKB/TrEMBL
      A0A5S6R949, A0A8J8XSB0, F7ESW6, G7MV69
      Related
      ENSMMUP00000071540.1, ENSMMUT00000088218.1
      Conserved Domains (1) summary
      pfam03987
      Location:12 → 207
      Autophagy_act_C; Autophagocytosis associated protein, active-site domain

    7. XM_015140354.2 → XP_014995840.1  ubiquitin-like-conjugating enzyme ATG10 isoform X2

      UniProtKB/TrEMBL
      A0A5S6R949, A0A8J8XSB0, F7ESW6, G7MV69
      Conserved Domains (1) summary
      pfam03987
      Location:12 → 207
      Autophagy_act_C; Autophagocytosis associated protein, active-site domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.