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    RCSD1 RCSD domain containing 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 701239, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RCSD1provided by VGNC
    Official Full Name
    RCSD domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:76850
    See related
    Ensembl:ENSMMUG00000023372
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See RCSD1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (24987711..25064452)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (199975436..200052109, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene cellular repressor of E1A stimulated genes 1 Neighboring gene 40S ribosomal protein S18 pseudogene Neighboring gene uncharacterized LOC106994908 Neighboring gene uncharacterized LOC106994907 Neighboring gene transfer RNA proline (anticodon CGG) Neighboring gene transfer RNA proline (anticodon AGG)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables retromer complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein localization to endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in skeletal muscle contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of WASH complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in early endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    capZ-interacting protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      24987711..25064452
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015125288.2 → XP_014980774.2  capZ-interacting protein isoform X2

      UniProtKB/TrEMBL
      A0A1D5R8U2, F7B927
      Related
      ENSMMUP00000067798.1, ENSMMUT00000079829.1
      Conserved Domains (2) summary
      pfam05177
      Location:229 → 329
      RCSD; RCSD region
      pfam15255
      Location:81 → 166
      CAP-ZIP_m; WASH complex subunit CAP-Z interacting, central region

    2. XM_015125296.2 → XP_014980782.2  capZ-interacting protein isoform X3

      UniProtKB/TrEMBL
      F7B927
      Conserved Domains (2) summary
      pfam05177
      Location:199 → 299
      RCSD; RCSD region
      pfam15255
      Location:51 → 136
      CAP-ZIP_m; WASH complex subunit CAP-Z interacting, central region

    3. XM_028850088.1 → XP_028705921.1  capZ-interacting protein isoform X1

      UniProtKB/TrEMBL
      F7B927
      Related
      ENSMMUP00000037712.3, ENSMMUT00000044696.3
      Conserved Domains (2) summary
      pfam05177
      Location:199 → 299
      RCSD; RCSD region
      pfam15255
      Location:51 → 136
      CAP-ZIP_m; WASH complex subunit CAP-Z interacting, central region

    4. XM_028850097.1 → XP_028705930.1  capZ-interacting protein isoform X4

      Conserved Domains (1) summary
      pfam05177
      Location:116 → 216
      RCSD; RCSD region
    Nucleotide Protein
    Heading Accession and Version

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