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    ARID4B AT-rich interaction domain 4B [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 718320, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ARID4Bprovided by VGNC
    Official Full Name
    AT-rich interaction domain 4Bprovided by VGNC
    Primary source
    VGNC:VGNC:69831
    See related
    Ensembl:ENSMMUG00000007141
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See ARID4B in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (13700125..13866810)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (211447543..211613864, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene beta-1,3-N-acetylgalactosaminyltransferase 2 Neighboring gene tubulin folding cofactor E Neighboring gene geranylgeranyl diphosphate synthase 1 Neighboring gene small nucleolar RNA SNORA14 Neighboring gene RNA binding motif protein 34 Neighboring gene translocase of outer mitochondrial membrane 20

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AT-rich interactive domain-containing protein 4B
    Names
    AT rich interactive domain 4B (RBP1-like)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      13700125..13866810
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015126891.2 → XP_014982377.1  AT-rich interactive domain-containing protein 4B isoform X3

      UniProtKB/TrEMBL
      A0A5K1UJF2, F7DN95, H9FVQ8
      Related
      ENSMMUP00000069237.1, ENSMMUT00000106833.1
      Conserved Domains (3) summary
      smart00333
      Location:58 → 113
      TUDOR; Tudor domain
      cd16883
      Location:308 → 399
      ARID_ARID4B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
      pfam08169
      Location:170 → 263
      RBB1NT; RBB1NT (NUC162) domain

    2. XM_015126853.2 → XP_014982339.1  AT-rich interactive domain-containing protein 4B isoform X1

      UniProtKB/TrEMBL
      A0A5K1UJF2, F7DN77, H9FVQ7
      Related
      ENSMMUP00000009359.3, ENSMMUT00000009970.4
      Conserved Domains (4) summary
      smart00333
      Location:58 → 113
      TUDOR; Tudor domain
      smart01014
      Location:311 → 394
      ARID; ARID/BRIGHT DNA binding domain
      pfam08169
      Location:170 → 262
      RBB1NT; RBB1NT (NUC162) domain
      pfam11717
      Location:572 → 625
      Tudor-knot; RNA binding activity-knot of a chromodomain

    3. XM_015126883.2 → XP_014982369.1  AT-rich interactive domain-containing protein 4B isoform X2

      UniProtKB/TrEMBL
      A0A5K1UJF2
      Conserved Domains (3) summary
      smart00333
      Location:58 → 113
      TUDOR; Tudor domain
      smart01014
      Location:311 → 394
      ARID; ARID/BRIGHT DNA binding domain
      pfam08169
      Location:170 → 262
      RBB1NT; RBB1NT (NUC162) domain
    Nucleotide Protein
    Heading Accession and Version

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