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    PCDH18 protocadherin 18 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 698420, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PCDH18provided by VGNC
    Official Full Name
    protocadherin 18provided by VGNC
    Primary source
    VGNC:VGNC:75600
    See related
    Ensembl:ENSMMUG00000008362
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PCDH18 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 5 NC_041758.1 (135376982..135389865, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 5 NC_027897.1 (137415647..137429290, complement)

    Chromosome 5 - NC_041758.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S23 pseudogene Neighboring gene U4 spliceosomal RNA Neighboring gene solute carrier family 7 member 11 Neighboring gene uncharacterized LOC114678400

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protocadherin-18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041758.1 Reference Mmul_10 Primary Assembly

      Range
      135376982..135389865 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015139214.2 → XP_014994700.1  protocadherin-18 isoform X2

      Conserved Domains (2) summary
      cd11304
      Location:470 → 572
      Cadherin_repeat; Cadherin tandem repeat domain
      cl09101
      Location:30 → 111
      E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

    2. XM_001086925.4 → XP_001086925.2  protocadherin-18 isoform X1

      UniProtKB/TrEMBL
      F7HPU3
      Related
      ENSMMUP00000010967.2, ENSMMUT00000011695.4
      Conserved Domains (2) summary
      cd11304
      Location:470 → 572
      Cadherin_repeat; Cadherin tandem repeat domain
      cl09101
      Location:30 → 111
      E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

    3. XM_015139215.2 → XP_014994701.1  protocadherin-18 isoform X4

      Conserved Domains (1) summary
      cd11304
      Location:250 → 352
      Cadherin_repeat; Cadherin tandem repeat domain

    4. XM_015139216.2 → XP_014994702.1  protocadherin-18 isoform X5

      UniProtKB/TrEMBL
      A0A1D5R4K2
      Conserved Domains (1) summary
      cd11304
      Location:250 → 352
      Cadherin_repeat; Cadherin tandem repeat domain

    5. XM_028848773.1 → XP_028704606.1  protocadherin-18 isoform X3

      Conserved Domains (2) summary
      cd11304
      Location:470 → 572
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam08266
      Location:30 → 111
      Cadherin_2; Cadherin-like
    Nucleotide Protein
    Heading Accession and Version

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