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    EFEMP1 EGF containing fibulin extracellular matrix protein 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 718984, updated on 17-Aug-2024

    Summary

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    Official Symbol
    EFEMP1provided by VGNC
    Official Full Name
    EGF containing fibulin extracellular matrix protein 1provided by VGNC
    Primary source
    VGNC:VGNC:72165
    Locus tag
    EGK_05341
    See related
    Ensembl:ENSMMUG00000016872
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See EFEMP1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 13 NC_041766.1 (52736303..52794411)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 13 NC_027905.1 (56841094..56899204, complement)

    Chromosome 13 - NC_041766.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114671706 Neighboring gene microRNA mir-216b Neighboring gene microRNA mir-216a Neighboring gene polyribonucleotide nucleotidyltransferase 1 Neighboring gene protein phosphatase 4 regulatory subunit 3B Neighboring gene small nucleolar RNA SNORA12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    EGF-containing fibulin-like extracellular matrix protein 1
    Names
    EGF containing fibulin like extracellular matrix protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041766.1 Reference Mmul_10 Primary Assembly

      Range
      52736303..52794411
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015112404.2 → XP_014967890.1  EGF-containing fibulin-like extracellular matrix protein 1

      UniProtKB/TrEMBL
      A0A1D5RIC2, A0A5K1VTV0, A0A663DBH9, A0A8J8Y7K4, F7BQM7, G7NA36
      Related
      ENSMMUP00000060066.2, ENSMMUT00000074056.2
      Conserved Domains (3) summary
      smart00179
      Location:214 → 244
      EGF_CA; Calcium-binding EGF-like domain
      pfam07645
      Location:173 → 206
      EGF_CA; Calcium-binding EGF domain
      pfam12662
      Location:274 → 297
      cEGF; Complement Clr-like EGF-like

    2. XM_015112406.2 → XP_014967892.1  EGF-containing fibulin-like extracellular matrix protein 1

      UniProtKB/TrEMBL
      A0A1D5RIC2, A0A5K1VTV0, A0A663DBH9, A0A8J8Y7K4, F7BQM7, G7NA36
      Conserved Domains (3) summary
      smart00179
      Location:214 → 244
      EGF_CA; Calcium-binding EGF-like domain
      pfam07645
      Location:173 → 206
      EGF_CA; Calcium-binding EGF domain
      pfam12662
      Location:274 → 297
      cEGF; Complement Clr-like EGF-like

    3. XM_015112405.2 → XP_014967891.1  EGF-containing fibulin-like extracellular matrix protein 1

      UniProtKB/TrEMBL
      A0A1D5RIC2, A0A5K1VTV0, A0A663DBH9, A0A8J8Y7K4, F7BQM7, G7NA36
      Conserved Domains (3) summary
      smart00179
      Location:214 → 244
      EGF_CA; Calcium-binding EGF-like domain
      pfam07645
      Location:173 → 206
      EGF_CA; Calcium-binding EGF domain
      pfam12662
      Location:274 → 297
      cEGF; Complement Clr-like EGF-like
    Nucleotide Protein
    Heading Accession and Version

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