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    ZKSCAN4 zinc finger with KRAB and SCAN domains 4 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 706745, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ZKSCAN4provided by VGNC
    Official Full Name
    zinc finger with KRAB and SCAN domains 4provided by VGNC
    Primary source
    VGNC:VGNC:104441
    Locus tag
    EGK_14617
    See related
    Ensembl:ENSMMUG00000054954
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See ZKSCAN4 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (142016124..142027568)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (28642166..28653632, complement)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene zinc finger and SCAN domain containing 26 Neighboring gene NFKB activating protein like Neighboring gene zinc finger and SCAN domain containing 9 Neighboring gene protein Tob2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein with KRAB and SCAN domains 4
    Names
    Zinc finger protein 307

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      142016124..142027568
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028847755.1 → XP_028703588.1  zinc finger protein with KRAB and SCAN domains 4 isoform X2

      UniProtKB/TrEMBL
      H9YWZ1
      Conserved Domains (6) summary
      COG5048
      Location:345 → 509
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:349 → 369
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:291 → 313
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:306 → 328
      zf-H2C2_2; Zinc-finger double domain
      cl02581
      Location:192 → 254
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
      cl02605
      Location:49 → 131
      SCAN; SCAN oligomerization domain

    2. XM_028847756.1 → XP_028703589.1  zinc finger protein with KRAB and SCAN domains 4 isoform X3

      UniProtKB/TrEMBL
      H9F3F7, H9F483
      Conserved Domains (5) summary
      COG5048
      Location:271 → 435
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:275 → 295
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:217 → 239
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:232 → 254
      zf-H2C2_2; Zinc-finger double domain
      cl02581
      Location:118 → 180
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    3. XM_015135795.2 → XP_014991281.2  zinc finger protein with KRAB and SCAN domains 4 isoform X1

      UniProtKB/TrEMBL
      A0A5F8ACZ6, H9YWZ1
      Related
      ENSMMUP00000075745.1, ENSMMUT00000092502.1
      Conserved Domains (6) summary
      smart00431
      Location:49 → 160
      SCAN; leucine rich region
      COG5048
      Location:374 → 538
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:378 → 398
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:320 → 342
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:335 → 357
      zf-H2C2_2; Zinc-finger double domain
      cl02581
      Location:221 → 283
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    4. XM_015135796.2 → XP_014991282.1  zinc finger protein with KRAB and SCAN domains 4 isoform X4

      UniProtKB/TrEMBL
      H9F3F7, H9F483
      Conserved Domains (6) summary
      smart00349
      Location:71 → 133
      KRAB; krueppel associated box
      COG5048
      Location:224 → 388
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:228 → 248
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:282 → 304
      zf-C2H2; Zinc finger, C2H2 type
      pfam01352
      Location:74 → 109
      KRAB; KRAB box
      pfam13465
      Location:240 → 265
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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