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    CD6 CD6 molecule [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 695183, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CD6provided by VGNC
    Official Full Name
    CD6 moleculeprovided by VGNC
    Primary source
    VGNC:VGNC:100906
    See related
    Ensembl:ENSMMUG00000044417
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CD6 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (13214623..13264563, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (13262905..13312762, complement)

    Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene VPS37C subunit of ESCRT-I Neighboring gene uncharacterized LOC100428235 Neighboring gene CD5 molecule Neighboring gene U6 spliceosomal RNA Neighboring gene solute carrier family 15 member 3 Neighboring gene transmembrane protein 132A Neighboring gene uncharacterized LOC106993224 Neighboring gene transmembrane protein 109

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    T-cell differentiation antigen CD6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041767.1 Reference Mmul_10 Primary Assembly

      Range
      13214623..13264563 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028833378.1 → XP_028689211.1  T-cell differentiation antigen CD6 isoform X5

      Conserved Domains (1) summary
      smart00202
      Location:161 → 260
      SR; Scavenger receptor Cys-rich

    2. XM_015114058.2 → XP_014969544.1  T-cell differentiation antigen CD6 isoform X4

      UniProtKB/TrEMBL
      A0A1D5R1B0
      Conserved Domains (2) summary
      smart00202
      Location:161 → 260
      SR; Scavenger receptor Cys-rich
      pfam00530
      Location:166 → 260
      SRCR; Scavenger receptor cysteine-rich domain

    3. XM_015114057.2 → XP_014969543.1  T-cell differentiation antigen CD6 isoform X2

      UniProtKB/TrEMBL
      A0A1D5R1B0, H9ZFC2
      Related
      ENSMMUP00000071003.1, ENSMMUT00000083926.1
      Conserved Domains (2) summary
      smart00202
      Location:161 → 260
      SR; Scavenger receptor Cys-rich
      pfam00530
      Location:166 → 260
      SRCR; Scavenger receptor cysteine-rich domain

    4. XM_015114056.2 → XP_014969542.1  T-cell differentiation antigen CD6 isoform X1

      UniProtKB/TrEMBL
      A0A1D5R1B0
      Conserved Domains (2) summary
      smart00202
      Location:161 → 260
      SR; Scavenger receptor Cys-rich
      pfam00530
      Location:166 → 260
      SRCR; Scavenger receptor cysteine-rich domain

    5. XM_028833377.1 → XP_028689210.1  T-cell differentiation antigen CD6 isoform X3

      UniProtKB/TrEMBL
      A0A1D5R1B0, A0A1D5REH2
      Related
      ENSMMUP00000058715.2, ENSMMUT00000061608.2
      Conserved Domains (2) summary
      smart00202
      Location:156 → 255
      SR; Scavenger receptor Cys-rich
      pfam00530
      Location:265 → 356
      SRCR; Scavenger receptor cysteine-rich domain
    Nucleotide Protein
    Heading Accession and Version

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