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    ZKSCAN3 zinc finger with KRAB and SCAN domains 3 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 707581, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ZKSCAN3provided by VGNC
    Official Full Name
    zinc finger with KRAB and SCAN domains 3provided by VGNC
    Primary source
    VGNC:VGNC:78938
    See related
    Ensembl:ENSMMUG00000018054
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    ZNF306
    Orthologs
    human all
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    Genomic context

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    See ZKSCAN3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (141881745..141898379, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (28770230..28787889)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114677654 Neighboring gene uncharacterized LOC106997870 Neighboring gene zinc finger and SCAN domain containing 12 Neighboring gene zinc finger and SCAN domain containing 31 Neighboring gene small integral membrane protein 15-like Neighboring gene piggyBac transposable element derived 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein with KRAB and SCAN domains 3
    Names
    zinc finger protein 306

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      141881745..141898379 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028847752.1 → XP_028703585.1  zinc finger protein with KRAB and SCAN domains 3 isoform X1

      UniProtKB/TrEMBL
      F7EGB2, G7MRB2
      Related
      ENSMMUP00000009487.3, ENSMMUT00000010106.4
      Conserved Domains (6) summary
      smart00431
      Location:42 → 154
      SCAN; leucine rich region
      COG5048
      Location:399 → 546
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:403 → 423
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:345 → 367
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:360 → 382
      zf-H2C2_2; Zinc-finger double domain
      cl02581
      Location:214 → 257
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    2. XM_001100960.3 → XP_001100960.1  zinc finger protein with KRAB and SCAN domains 3 isoform X2

      See identical proteins and their annotated locations for XP_001100960.1

      UniProtKB/TrEMBL
      A0A5F7ZY50, G7MRB2
      Related
      ENSMMUP00000070559.1, ENSMMUT00000084318.1
      Conserved Domains (8) summary
      smart00431
      Location:42 → 154
      SCAN; leucine rich region
      smart00349
      Location:214 → 274
      KRAB; krueppel associated box
      COG5048
      Location:368 → 515
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:372 → 392
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:314 → 336
      zf-C2H2; Zinc finger, C2H2 type
      pfam01352
      Location:217 → 252
      KRAB; KRAB box
      pfam02023
      Location:42 → 130
      SCAN; SCAN domain
      pfam13465
      Location:384 → 409
      zf-H2C2_2; Zinc-finger double domain

    3. XM_028847751.1 → XP_028703584.1  zinc finger protein with KRAB and SCAN domains 3 isoform X1

      UniProtKB/TrEMBL
      F7EGB2, G7MRB2
      Conserved Domains (6) summary
      smart00431
      Location:42 → 154
      SCAN; leucine rich region
      COG5048
      Location:399 → 546
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:403 → 423
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:345 → 367
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:360 → 382
      zf-H2C2_2; Zinc-finger double domain
      cl02581
      Location:214 → 257
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    Nucleotide Protein
    Heading Accession and Version

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