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    CDK5RAP1 CDK5 regulatory subunit associated protein 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 714295, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CDK5RAP1provided by VGNC
    Official Full Name
    CDK5 regulatory subunit associated protein 1provided by VGNC
    Primary source
    VGNC:VGNC:70954
    See related
    Ensembl:ENSMMUG00000008470
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CDK5RAP1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (68528323..68571187, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (30792407..30835835)

    Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107000429 Neighboring gene BPI fold containing family B member 1 Neighboring gene uncharacterized LOC114670468 Neighboring gene syntrophin alpha 1 Neighboring gene selenoprotein K pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 4 iron, 4 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables N6-isopentenyladenosine methylthiotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of cyclin-dependent protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tRNA modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CDK5 regulatory subunit-associated protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041763.1 Reference Mmul_10 Primary Assembly

      Range
      68528323..68571187 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015149199.2 → XP_015004685.1  CDK5 regulatory subunit-associated protein 1 isoform X4

      UniProtKB/TrEMBL
      G7N522
      Conserved Domains (3) summary
      PRK14329
      Location:89 → 575
      PRK14329; (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
      pfam00919
      Location:102 → 205
      UPF0004; Uncharacterized protein family UPF0004
      pfam01938
      Location:505 → 576
      TRAM; TRAM domain

    2. XM_015149198.2 → XP_015004684.1  CDK5 regulatory subunit-associated protein 1 isoform X3

      UniProtKB/TrEMBL
      F7B9L0, G7N522
      Related
      ENSMMUP00000037709.3, ENSMMUT00000044693.3
      Conserved Domains (3) summary
      PRK14329
      Location:88 → 524
      PRK14329; (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
      pfam00919
      Location:101 → 204
      UPF0004; Uncharacterized protein family UPF0004
      cl01282
      Location:472 → 525
      TRAM; TRAM domain

    3. XM_015149194.2 → XP_015004680.1  CDK5 regulatory subunit-associated protein 1 isoform X1

      UniProtKB/TrEMBL
      F6THQ1, F7B971, G7N522, H9FVP6
      Conserved Domains (3) summary
      PRK14329
      Location:88 → 574
      PRK14329; (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
      pfam00919
      Location:101 → 204
      UPF0004; Uncharacterized protein family UPF0004
      pfam01938
      Location:504 → 575
      TRAM; TRAM domain

    4. XM_015149195.2 → XP_015004681.1  CDK5 regulatory subunit-associated protein 1 isoform X1

      UniProtKB/TrEMBL
      F6THQ1, F7B971, G7N522, H9FVP6
      Related
      ENSMMUP00000011110.4, ENSMMUT00000011845.4
      Conserved Domains (3) summary
      PRK14329
      Location:88 → 574
      PRK14329; (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
      pfam00919
      Location:101 → 204
      UPF0004; Uncharacterized protein family UPF0004
      pfam01938
      Location:504 → 575
      TRAM; TRAM domain

    5. XM_015149197.2 → XP_015004683.1  CDK5 regulatory subunit-associated protein 1 isoform X2

      UniProtKB/TrEMBL
      G7N522
      Conserved Domains (3) summary
      PRK14329
      Location:88 → 562
      PRK14329; (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
      pfam00919
      Location:101 → 204
      UPF0004; Uncharacterized protein family UPF0004
      cl01282
      Location:504 → 562
      TRAM; TRAM domain
    Nucleotide Protein
    Heading Accession and Version

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