U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SNRNP200 small nuclear ribonucleoprotein U5 subunit 200 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 705184, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SNRNP200provided by VGNC
    Official Full Name
    small nuclear ribonucleoprotein U5 subunit 200provided by VGNC
    Primary source
    VGNC:VGNC:77802
    See related
    Ensembl:ENSMMUG00000023261
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SNRNP200 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    45
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 13 NC_041766.1 (687898..718175, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 13 NC_027905.1 (92068697..92098976, complement)

    Chromosome 13 - NC_041766.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 127 Neighboring gene cytosolic iron-sulfur assembly component 1 Neighboring gene uncharacterized LOC114671863 Neighboring gene uncharacterized LOC106993079 Neighboring gene ITPRIP like 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    U5 small nuclear ribonucleoprotein 200 kDa helicase
    Names
    small nuclear ribonucleoprotein 200kDa (U5)
    XP_014968343.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041766.1 Reference Mmul_10 Primary Assembly

      Range
      687898..718175 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015112857.2 → XP_014968343.1  U5 small nuclear ribonucleoprotein 200 kDa helicase

      UniProtKB/TrEMBL
      F7FKG4, H9EM61, I0FQ43
      Related
      ENSMMUP00000030627.3, ENSMMUT00000032731.4
      Conserved Domains (7) summary
      smart00490
      Location:1616 → 1694
      HELICc; helicase superfamily c-terminal domain
      smart00487
      Location:1320 → 1508
      DEXDc; DEAD-like helicases superfamily
      smart00611
      Location:1809 → 2125
      SEC63; Domain of unknown function in Sec63p, Brr2p and other proteins
      COG1204
      Location:452 → 1241
      BRR2; Replicative superfamily II helicase [Replication, recombination and repair]
      cd00079
      Location:684 → 870
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      pfam00270
      Location:1329 → 1500
      DEAD; DEAD/DEAH box helicase
      pfam02889
      Location:982 → 1285
      Sec63; Sec63 Brl domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.