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    SYNJ1 synaptojanin 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 707829, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SYNJ1provided by VGNC
    Official Full Name
    synaptojanin 1provided by VGNC
    Primary source
    VGNC:VGNC:78071
    See related
    Ensembl:ENSMMUG00000004624
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SYNJ1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    37
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (13796781..13899208)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (13941142..14044368)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene uncharacterized LOC106997272 Neighboring gene microRNA mir-7185 Neighboring gene cilia and flagella associated protein 298 Neighboring gene t-complex 10 like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brain development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphatidylinositol dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic vesicle endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in presynapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    synaptojanin-1
    XP_014988489.2
    XP_014988490.2
    XP_014988492.2
    XP_014988493.2
    XP_014988494.2
    XP_014988498.2
    XP_014988506.2
    XP_028701191.1
    XP_028701192.1
    XP_028701193.1
    XP_028701194.1
    XP_028701195.1
    XP_028701196.1
    XP_028701197.1
    XP_028701198.1
    XP_028701199.1
    XP_028701200.1
    XP_028701201.1
    XP_028701202.1
    XP_028701203.1
    XP_028701204.1
    XP_028701205.1
    XP_028701206.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      13796781..13899208
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028845358.1 → XP_028701191.1  synaptojanin-1 isoform X1

      UniProtKB/TrEMBL
      G7MN18
      Conserved Domains (4) summary
      cd09098
      Location:575 → 910
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      COG5329
      Location:73 → 522
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      pfam08952
      Location:909 → 1050
      DUF1866; Domain of unknown function (DUF1866)
      pfam03154
      Location:1030 → 1501
      Atrophin-1; Atrophin-1 family

    2. XM_028845361.1 → XP_028701194.1  synaptojanin-1 isoform X4

      UniProtKB/TrEMBL
      G7MN18
      Related
      ENSMMUP00000072451.1, ENSMMUT00000097051.1
      Conserved Domains (4) summary
      cd09098
      Location:575 → 910
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      COG5329
      Location:73 → 522
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      pfam08952
      Location:909 → 1050
      DUF1866; Domain of unknown function (DUF1866)
      pfam03154
      Location:1052 → 1485
      Atrophin-1; Atrophin-1 family

    3. XM_028845363.1 → XP_028701196.1  synaptojanin-1 isoform X6

      UniProtKB/TrEMBL
      G7MN18
      Related
      ENSMMUP00000078958.1, ENSMMUT00000084814.1
      Conserved Domains (4) summary
      cd09098
      Location:575 → 910
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      COG5329
      Location:73 → 522
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      pfam08952
      Location:909 → 1050
      DUF1866; Domain of unknown function (DUF1866)
      pfam03154
      Location:1104 → 1472
      Atrophin-1; Atrophin-1 family

    4. XM_028845364.1 → XP_028701197.1  synaptojanin-1 isoform X9

      UniProtKB/TrEMBL
      G7MN18
      Conserved Domains (4) summary
      cd09098
      Location:575 → 910
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      COG5329
      Location:73 → 522
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      pfam08952
      Location:909 → 1050
      DUF1866; Domain of unknown function (DUF1866)
      pfam03154
      Location:1030 → 1459
      Atrophin-1; Atrophin-1 family

    5. XM_028845360.1 → XP_028701193.1  synaptojanin-1 isoform X3

      UniProtKB/TrEMBL
      G7MN18
      Conserved Domains (4) summary
      cd09098
      Location:567 → 902
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      COG5329
      Location:73 → 522
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      pfam08952
      Location:901 → 1042
      DUF1866; Domain of unknown function (DUF1866)
      pfam03154
      Location:1022 → 1493
      Atrophin-1; Atrophin-1 family

    6. XM_028845373.1 → XP_028701206.1  synaptojanin-1 isoform X19

      UniProtKB/TrEMBL
      H9F0W0
      Conserved Domains (4) summary
      cd09098
      Location:567 → 902
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      COG5329
      Location:73 → 522
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      pfam08952
      Location:901 → 1042
      DUF1866; Domain of unknown function (DUF1866)
      pfam03154
      Location:1022 → 1302
      Atrophin-1; Atrophin-1 family

    7. XM_028845365.1 → XP_028701198.1  synaptojanin-1 isoform X11

      UniProtKB/TrEMBL
      F6PZA6
      Related
      ENSMMUP00000006154.4, ENSMMUT00000006543.4
      Conserved Domains (4) summary
      cd09098
      Location:567 → 902
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      COG5329
      Location:73 → 522
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      pfam08952
      Location:901 → 1042
      DUF1866; Domain of unknown function (DUF1866)
      pfam03154
      Location:1022 → 1451
      Atrophin-1; Atrophin-1 family

    8. XM_028845369.1 → XP_028701202.1  synaptojanin-1 isoform X15

      UniProtKB/TrEMBL
      H9F0W0
      Conserved Domains (4) summary
      cd09098
      Location:572 → 907
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      PHA03247
      Location:1098 → 1348
      PHA03247; large tegument protein UL36; Provisional
      COG5329
      Location:73 → 519
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      pfam08952
      Location:906 → 1047
      DUF1866; Domain of unknown function (DUF1866)

    9. XM_028845359.1 → XP_028701192.1  synaptojanin-1 isoform X2

      UniProtKB/TrEMBL
      F7DSU6, G7MN18
      Related
      ENSMMUP00000035609.3, ENSMMUT00000042601.3
      Conserved Domains (4) summary
      cd09098
      Location:572 → 907
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      COG5329
      Location:73 → 519
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      pfam08952
      Location:906 → 1047
      DUF1866; Domain of unknown function (DUF1866)
      pfam03154
      Location:1027 → 1498
      Atrophin-1; Atrophin-1 family

    10. XM_028845362.1 → XP_028701195.1  synaptojanin-1 isoform X5

      UniProtKB/TrEMBL
      G7MN18
      Conserved Domains (4) summary
      cd09098
      Location:572 → 907
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      COG5329
      Location:73 → 519
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      pfam08952
      Location:906 → 1047
      DUF1866; Domain of unknown function (DUF1866)
      pfam03154
      Location:1049 → 1482
      Atrophin-1; Atrophin-1 family

    11. XM_028845366.1 → XP_028701199.1  synaptojanin-1 isoform X13

      UniProtKB/TrEMBL
      H9F0W0
      Conserved Domains (4) summary
      cd09098
      Location:575 → 910
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      PHA03247
      Location:1101 → 1351
      PHA03247; large tegument protein UL36; Provisional
      COG5329
      Location:73 → 522
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      pfam08952
      Location:909 → 1050
      DUF1866; Domain of unknown function (DUF1866)

    12. XM_028845370.1 → XP_028701203.1  synaptojanin-1 isoform X16

      UniProtKB/TrEMBL
      G7MN18
      Conserved Domains (4) summary
      cd09098
      Location:575 → 910
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      PHA03247
      Location:1101 → 1335
      PHA03247; large tegument protein UL36; Provisional
      COG5329
      Location:73 → 522
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      pfam08952
      Location:909 → 1050
      DUF1866; Domain of unknown function (DUF1866)

    13. XM_028845371.1 → XP_028701204.1  synaptojanin-1 isoform X17

      UniProtKB/TrEMBL
      G7MN18
      Conserved Domains (4) summary
      cd09098
      Location:572 → 907
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      PHA03247
      Location:1098 → 1332
      PHA03247; large tegument protein UL36; Provisional
      COG5329
      Location:73 → 519
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      pfam08952
      Location:906 → 1047
      DUF1866; Domain of unknown function (DUF1866)

    14. XM_028845367.1 → XP_028701200.1  synaptojanin-1 isoform X14

      UniProtKB/TrEMBL
      H9F0W0
      Related
      ENSMMUP00000066633.1, ENSMMUT00000104438.1
      Conserved Domains (4) summary
      cd09098
      Location:575 → 910
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      PHA03247
      Location:1096 → 1352
      PHA03247; large tegument protein UL36; Provisional
      COG5329
      Location:73 → 522
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      pfam08952
      Location:909 → 1050
      DUF1866; Domain of unknown function (DUF1866)

    15. XM_028845368.1 → XP_028701201.1  synaptojanin-1 isoform X14

      UniProtKB/TrEMBL
      H9F0W0
      Conserved Domains (4) summary
      cd09098
      Location:575 → 910
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      PHA03247
      Location:1096 → 1352
      PHA03247; large tegument protein UL36; Provisional
      COG5329
      Location:73 → 522
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      pfam08952
      Location:909 → 1050
      DUF1866; Domain of unknown function (DUF1866)

    16. XM_015133003.2 → XP_014988489.2  synaptojanin-1 isoform X7

      UniProtKB/TrEMBL
      A0A5F8A514
      Conserved Domains (4) summary
      cd09098
      Location:536 → 871
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      COG5329
      Location:34 → 483
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      pfam08952
      Location:870 → 1011
      DUF1866; Domain of unknown function (DUF1866)
      pfam03154
      Location:991 → 1462
      Atrophin-1; Atrophin-1 family

    17. XM_015133008.2 → XP_014988494.2  synaptojanin-1 isoform X10

      UniProtKB/TrEMBL
      A0A5F8A514
      Conserved Domains (4) summary
      cd09098
      Location:528 → 863
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      COG5329
      Location:34 → 483
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      pfam08952
      Location:862 → 1003
      DUF1866; Domain of unknown function (DUF1866)
      pfam03154
      Location:983 → 1454
      Atrophin-1; Atrophin-1 family

    18. XM_015133012.2 → XP_014988498.2  synaptojanin-1 isoform X12

      UniProtKB/TrEMBL
      F6PZA6
      Related
      ENSMMUP00000065594.1, ENSMMUT00000096329.1
      Conserved Domains (4) summary
      cd09098
      Location:528 → 863
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      COG5329
      Location:34 → 483
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      pfam08952
      Location:862 → 1003
      DUF1866; Domain of unknown function (DUF1866)
      pfam03154
      Location:983 → 1412
      Atrophin-1; Atrophin-1 family

    19. XM_015133007.2 → XP_014988493.2  synaptojanin-1 isoform X8

      UniProtKB/TrEMBL
      A0A5F8A514
      Conserved Domains (4) summary
      cd09098
      Location:533 → 868
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      COG5329
      Location:34 → 480
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      pfam08952
      Location:867 → 1008
      DUF1866; Domain of unknown function (DUF1866)
      pfam03154
      Location:988 → 1459
      Atrophin-1; Atrophin-1 family

    20. XM_015133020.2 → XP_014988506.2  synaptojanin-1 isoform X20

      UniProtKB/TrEMBL
      H9F0W0
      Conserved Domains (5) summary
      cd09098
      Location:533 → 868
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      PHA03247
      Location:1059 → 1293
      PHA03247; large tegument protein UL36; Provisional
      COG5329
      Location:34 → 480
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      PRK05641
      Location:1017 → 1093
      PRK05641; putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
      pfam08952
      Location:867 → 1008
      DUF1866; Domain of unknown function (DUF1866)

    21. XM_015133004.2 → XP_014988490.2  synaptojanin-1 isoform X7

      UniProtKB/TrEMBL
      A0A5F8A514
      Conserved Domains (4) summary
      cd09098
      Location:536 → 871
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      COG5329
      Location:34 → 483
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      pfam08952
      Location:870 → 1011
      DUF1866; Domain of unknown function (DUF1866)
      pfam03154
      Location:991 → 1462
      Atrophin-1; Atrophin-1 family

    22. XM_015133006.2 → XP_014988492.2  synaptojanin-1 isoform X7

      UniProtKB/TrEMBL
      A0A5F8A514
      Conserved Domains (4) summary
      cd09098
      Location:536 → 871
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      COG5329
      Location:34 → 483
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      pfam08952
      Location:870 → 1011
      DUF1866; Domain of unknown function (DUF1866)
      pfam03154
      Location:991 → 1462
      Atrophin-1; Atrophin-1 family

    23. XM_028845372.1 → XP_028701205.1  synaptojanin-1 isoform X18

      UniProtKB/TrEMBL
      A0A5F7ZXZ1
      Conserved Domains (4) summary
      cd09098
      Location:266 → 601
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      PHA03247
      Location:792 → 1106
      PHA03247; large tegument protein UL36; Provisional
      COG5329
      Location:2 → 213
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      pfam08952
      Location:600 → 741
      DUF1866; Domain of unknown function (DUF1866)
    Nucleotide Protein
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