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    IFT56 intraflagellar transport 56 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 715688, updated on 17-Aug-2024

    Summary

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    Official Symbol
    IFT56provided by VGNC
    Official Full Name
    intraflagellar transport 56provided by VGNC
    Primary source
    VGNC:VGNC:79341
    See related
    Ensembl:ENSMMUG00000013645
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    TTC26
    Orthologs
    human mouse all
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    Genomic context

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    See IFT56 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (165553663..165617383)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (165484197..165548274)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH-type containing, antiviral 1 like Neighboring gene zinc finger CCCH-type containing, antiviral 1 Neighboring gene male-specific lethal 3 homolog pseudogene Neighboring gene rRNA-processing protein FCF1 homolog pseudogene Neighboring gene microRNA mir-7186

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables intraciliary transport particle B binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intraciliary anterograde transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intraciliary transport involved in cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ciliary basal body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ciliary base IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of intraciliary transport particle B IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    intraflagellar transport protein 56
    Names
    tetratricopeptide repeat domain 26

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      165553663..165617383
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001106020.4 → XP_001106020.2  intraflagellar transport protein 56 isoform X1

      See identical proteins and their annotated locations for XP_001106020.2

      UniProtKB/TrEMBL
      A0A1D5Q9K7, G7MMM8
      Related
      ENSMMUP00000044725.2, ENSMMUT00000060796.2
      Conserved Domains (2) summary
      TIGR02917
      Location:33 → 346
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:58 → 86
      TPR; TPR repeat [structural motif]

    2. XM_028846362.1 → XP_028702195.1  intraflagellar transport protein 56 isoform X2

      UniProtKB/TrEMBL
      G7MMM8
      Conserved Domains (3) summary
      TIGR02917
      Location:121 → 309
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:24 → 49
      TPR; TPR repeat [structural motif]
      pfam14559
      Location:30 → 75
      TPR_19; Tetratricopeptide repeat
    Nucleotide Protein
    Heading Accession and Version

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