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    LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 693550, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LSM5provided by VGNC
    Official Full Name
    LSM5 homolog, U6 small nuclear RNA and mRNA degradation associatedprovided by VGNC
    Primary source
    VGNC:VGNC:108418
    Locus tag
    EGK_13793
    See related
    Ensembl:ENSMMUG00000062758
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See LSM5 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (82641731..82650893)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (75664589..75675196)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene probable C-mannosyltransferase DPY19L1 Neighboring gene AVL9 cell migration associated Neighboring gene uncharacterized LOC114676945 Neighboring gene U6 spliceosomal RNA Neighboring gene ADP/ATP translocase 2 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Lsm1-7-Pat1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U6 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U6 snRNA-associated Sm-like protein LSm5
    Names
    LSM5 homolog, U6 small nuclear RNA associated

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257816.1 → NP_001244745.1  U6 snRNA-associated Sm-like protein LSm5

      See identical proteins and their annotated locations for NP_001244745.1

      Status: PROVISIONAL

      Source sequence(s)
      JU333751
      UniProtKB/TrEMBL
      A0A1D5R134, A0A5F7Z719, A0A8J8XVS5, G7MLJ0
      Related
      ENSMMUP00000061188.1, ENSMMUT00000110295.1
      Conserved Domains (1) summary
      cd01732
      Location:11 → 86
      LSm5; Like-Sm protein 5

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      82641731..82650893
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028844766.1 → XP_028700599.1  U6 snRNA-associated Sm-like protein LSm5 isoform X1

      Conserved Domains (1) summary
      cd01732
      Location:1 → 57
      LSm5; Like-Sm protein 5

    2. XM_028844767.1 → XP_028700600.1  U6 snRNA-associated Sm-like protein LSm5 isoform X1

      Conserved Domains (1) summary
      cd01732
      Location:1 → 57
      LSm5; Like-Sm protein 5
    Nucleotide Protein
    Heading Accession and Version

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