U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PTPRB protein tyrosine phosphatase receptor type B [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 718564, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    PTPRBprovided by VGNC
    Official Full Name
    protein tyrosine phosphatase receptor type Bprovided by VGNC
    Primary source
    VGNC:VGNC:76611
    See related
    Ensembl:ENSMMUG00000011072
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PTPRB in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    35
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (70010640..70134806, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (69269708..69393993, complement)

    Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene CCR4-NOT transcription complex subunit 2 Neighboring gene potassium calcium-activated channel subfamily M regulatory beta subunit 4 Neighboring gene fumarylacetoacetate hydrolase domain-containing protein 2B pseudogene Neighboring gene protein tyrosine phosphatase receptor type R Neighboring gene uncharacterized LOC114670892

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cadherin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein tyrosine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in angiogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    receptor-type tyrosine-protein phosphatase beta
    XP_001117453.3
    XP_001117455.3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041764.1 Reference Mmul_10 Primary Assembly

      Range
      70010640..70134806 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001117453.4 → XP_001117453.3  receptor-type tyrosine-protein phosphatase beta isoform X1

      UniProtKB/TrEMBL
      A0A1D5RCM2, G7N7N0
      Related
      ENSMMUP00000058064.2, ENSMMUT00000059696.2
      Conserved Domains (4) summary
      cd00063
      Location:508 → 583
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd00161
      Location:22 → 94
      RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
      pfam00041
      Location:1480 → 1558
      fn3; Fibronectin type III domain
      cd14617
      Location:1949 → 2176
      R-PTPc-B; catalytic domain of receptor-type tyrosine-protein phosphatase B

    2. XM_001117455.4 → XP_001117455.3  receptor-type tyrosine-protein phosphatase beta isoform X2

      UniProtKB/TrEMBL
      A0A1D5R2H4, G7N7N0
      Related
      ENSMMUP00000054509.2, ENSMMUT00000075622.2
      Conserved Domains (3) summary
      cd00063
      Location:290 → 365
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:1262 → 1340
      fn3; Fibronectin type III domain
      cd14617
      Location:1731 → 1958
      R-PTPc-B; catalytic domain of receptor-type tyrosine-protein phosphatase B
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.