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    ZFHX3 zinc finger homeobox 3 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 706074, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ZFHX3provided by VGNC
    Official Full Name
    zinc finger homeobox 3provided by VGNC
    Primary source
    VGNC:VGNC:79967
    See related
    Ensembl:ENSMMUG00000021041
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    ATBF1
    Orthologs
    human mouse all
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    Genomic context

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    See ZFHX3 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (58480312..58745828)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (58371909..58547840)

    Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene chromosome 20 C16orf47 homolog Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC106995078 Neighboring gene U7 small nuclear RNA Neighboring gene keratin, type I cytoskeletal 18 pseudogene Neighboring gene uncharacterized LOC114674456

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brain development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger homeobox protein 3
    Names
    AT-binding transcription factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041773.1 Reference Mmul_10 Primary Assembly

      Range
      58480312..58745828
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028841443.1 → XP_028697276.1  zinc finger homeobox protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A1D5QWX8
      Conserved Domains (5) summary
      smart00389
      Location:2148 → 2204
      HOX; Homeodomain
      COG5576
      Location:2597 → 2741
      COG5576; Homeodomain-containing transcription factor [Transcription]
      sd00017
      Location:1555 → 1579
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:1411 → 1431
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00046
      Location:2648 → 2701
      Homeobox; Homeobox domain

    2. XM_028841442.1 → XP_028697275.1  zinc finger homeobox protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QWX8, A0A5F7ZI76
      Related
      ENSMMUP00000065307.1, ENSMMUT00000103416.1
      Conserved Domains (5) summary
      smart00389
      Location:2149 → 2205
      HOX; Homeodomain
      COG5576
      Location:2598 → 2742
      COG5576; Homeodomain-containing transcription factor [Transcription]
      sd00017
      Location:1556 → 1580
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:1412 → 1432
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00046
      Location:2649 → 2702
      Homeobox; Homeobox domain

    3. XM_015126608.2 → XP_014982094.1  zinc finger homeobox protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QWX8, A0A5F7ZI76
      Conserved Domains (5) summary
      smart00389
      Location:2149 → 2205
      HOX; Homeodomain
      COG5576
      Location:2598 → 2742
      COG5576; Homeodomain-containing transcription factor [Transcription]
      sd00017
      Location:1556 → 1580
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:1412 → 1432
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00046
      Location:2649 → 2702
      Homeobox; Homeobox domain
    Nucleotide Protein
    Heading Accession and Version

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