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    ATAD2B ATPase family AAA domain containing 2B [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 703529, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ATAD2Bprovided by VGNC
    Official Full Name
    ATPase family AAA domain containing 2Bprovided by VGNC
    Primary source
    VGNC:VGNC:106130
    Locus tag
    EGK_05102
    See related
    Ensembl:ENSMMUG00000020952
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See ATAD2B in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 13 NC_041766.1 (85080120..85319672)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 13 NC_027905.1 (23950019..24133563, complement)

    Chromosome 13 - NC_041766.1Genomic Context describing neighboring genes Neighboring gene MFSD2 lysolipid transporter B, sphingolipid Neighboring gene UBX domain protein 2A Neighboring gene succinate dehydrogenase cytochrome b560 subunit, mitochondrial pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene 40S ribosomal protein S13 pseudogene Neighboring gene phosphoglycerate mutase 1-like Neighboring gene kelch like family member 29 Neighboring gene uncharacterized LOC114671758 Neighboring gene uncharacterized LOC106992868

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATPase family AAA domain-containing protein 2B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041766.1 Reference Mmul_10 Primary Assembly

      Range
      85080120..85319672
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028831938.1 → XP_028687771.1  ATPase family AAA domain-containing protein 2B isoform X1

      UniProtKB/TrEMBL
      F7H0N5
      Conserved Domains (3) summary
      cd05528
      Location:974 → 1085
      Bromo_AAA; Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this ...
      COG5076
      Location:866 → 1100
      COG5076; Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
      TIGR01243
      Location:411 → 683
      CDC48; AAA family ATPase, CDC48 subfamily

    2. XM_028831939.1 → XP_028687772.1  ATPase family AAA domain-containing protein 2B isoform X2

      UniProtKB/TrEMBL
      A0A5F8A6N6, F7H0N5
      Related
      ENSMMUP00000073515.1, ENSMMUT00000097167.1
      Conserved Domains (3) summary
      cd05528
      Location:974 → 1080
      Bromo_AAA; Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this ...
      COG5076
      Location:866 → 1095
      COG5076; Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
      TIGR01243
      Location:411 → 683
      CDC48; AAA family ATPase, CDC48 subfamily

    3. XM_028831942.1 → XP_028687775.1  ATPase family AAA domain-containing protein 2B isoform X6

      UniProtKB/TrEMBL
      F7H0N5
      Conserved Domains (3) summary
      cd05528
      Location:974 → 1085
      Bromo_AAA; Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this ...
      COG5076
      Location:866 → 1100
      COG5076; Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
      TIGR01243
      Location:411 → 683
      CDC48; AAA family ATPase, CDC48 subfamily

    4. XM_028831940.1 → XP_028687773.1  ATPase family AAA domain-containing protein 2B isoform X4

      UniProtKB/TrEMBL
      F7H0N5
      Conserved Domains (3) summary
      cd05528
      Location:974 → 1085
      Bromo_AAA; Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this ...
      COG5076
      Location:866 → 1100
      COG5076; Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
      TIGR01243
      Location:411 → 683
      CDC48; AAA family ATPase, CDC48 subfamily

    5. XM_028831941.1 → XP_028687774.1  ATPase family AAA domain-containing protein 2B isoform X5

      UniProtKB/TrEMBL
      A0A1D5Q4M6, F7H0N5
      Related
      ENSMMUP00000042990.2, ENSMMUT00000058361.2
      Conserved Domains (3) summary
      cd05528
      Location:974 → 1080
      Bromo_AAA; Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this ...
      COG5076
      Location:866 → 1095
      COG5076; Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
      TIGR01243
      Location:411 → 683
      CDC48; AAA family ATPase, CDC48 subfamily

    6. XM_015111801.2 → XP_014967287.1  ATPase family AAA domain-containing protein 2B isoform X3

      UniProtKB/TrEMBL
      A0A5K1VRM9, F7H0N5
      Related
      ENSMMUP00000027569.4, ENSMMUT00000029464.4
      Conserved Domains (4) summary
      cd05528
      Location:960 → 1071
      Bromo_AAA; Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this ...
      smart00382
      Location:433 → 574
      AAA; ATPases associated with a variety of cellular activities
      COG5076
      Location:852 → 1086
      COG5076; Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
      pfam00004
      Location:438 → 572
      AAA; ATPase family associated with various cellular activities (AAA)

    7. XM_015111803.2 → XP_014967289.1  ATPase family AAA domain-containing protein 2B isoform X7

      UniProtKB/TrEMBL
      A0A8J8XZ62, F7H0N5, F7H0R8, G7N9I1, H9YZE4
      Conserved Domains (4) summary
      cd05528
      Location:960 → 1071
      Bromo_AAA; Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this ...
      smart00382
      Location:433 → 574
      AAA; ATPases associated with a variety of cellular activities
      COG5076
      Location:852 → 1086
      COG5076; Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
      pfam00004
      Location:438 → 572
      AAA; ATPase family associated with various cellular activities (AAA)

    8. XM_015111804.2 → XP_014967290.1  ATPase family AAA domain-containing protein 2B isoform X8

      UniProtKB/TrEMBL
      F7H0N5
      Conserved Domains (4) summary
      cd05528
      Location:960 → 1066
      Bromo_AAA; Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this ...
      smart00382
      Location:433 → 574
      AAA; ATPases associated with a variety of cellular activities
      COG5076
      Location:852 → 1081
      COG5076; Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
      pfam00004
      Location:438 → 572
      AAA; ATPase family associated with various cellular activities (AAA)

    RNA

    1. XR_003721846.1 RNA Sequence

    2. XR_003721847.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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