U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SGCD sarcoglycan delta [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 715190, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SGCDprovided by VGNC
    Official Full Name
    sarcoglycan deltaprovided by VGNC
    Primary source
    VGNC:VGNC:77192
    See related
    Ensembl:ENSMMUG00000004581
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SGCD in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (153748492..154172024)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (154450896..154924276)

    Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114678953 Neighboring gene peptidyl-prolyl cis-trans isomerase G pseudogene Neighboring gene uncharacterized LOC114678954 Neighboring gene U6 spliceosomal RNA Neighboring gene MICOS complex subunit MIC26 pseudogene Neighboring gene T cell immunoglobulin and mucin domain containing 4

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cardiac muscle tissue development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heart contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of sarcoglycan complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in sarcolemma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    delta-sarcoglycan

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041759.1 Reference Mmul_10 Primary Assembly

      Range
      153748492..154172024
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001113209.4 → XP_001113209.4  delta-sarcoglycan isoform X1

      UniProtKB/TrEMBL
      F6RNT8, G7MVQ9
      Conserved Domains (1) summary
      pfam04790
      Location:24 → 278
      Sarcoglycan_1; Sarcoglycan complex subunit protein

    2. XM_015141314.2 → XP_014996800.2  delta-sarcoglycan isoform X2

      UniProtKB/TrEMBL
      G7MVQ9
      Conserved Domains (1) summary
      pfam04790
      Location:23 → 277
      Sarcoglycan_1; Sarcoglycan complex subunit protein

    3. XM_028849861.1 → XP_028705694.1  delta-sarcoglycan isoform X1

      UniProtKB/TrEMBL
      F6RNT8, G7MVQ9
      Related
      ENSMMUP00000006090.4, ENSMMUT00000006477.4
      Conserved Domains (1) summary
      pfam04790
      Location:24 → 278
      Sarcoglycan_1; Sarcoglycan complex subunit protein
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.