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    SYNPR synaptoporin [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 699098, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SYNPRprovided by VGNC
    Official Full Name
    synaptoporinprovided by VGNC
    Primary source
    VGNC:VGNC:78138
    See related
    Ensembl:ENSMMUG00000023718
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SYNPR in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (119438137..119769061)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (78445234..78616633, complement)

    Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106996884 Neighboring gene ubiquitin-like protein 5 Neighboring gene sentan, cilia apical structure protein Neighboring gene uncharacterized LOC106992366

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in synaptic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    synaptoporin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266609.1 → NP_001253538.1  synaptoporin precursor

      See identical proteins and their annotated locations for NP_001253538.1

      Status: PROVISIONAL

      Source sequence(s)
      JU332955
      UniProtKB/TrEMBL
      A0A1D5REG8, F7HAV7, H9FQ01
      Related
      ENSMMUP00000065910.1, ENSMMUT00000104948.1
      Conserved Domains (1) summary
      pfam01284
      Location:69 → 196
      MARVEL; Membrane-associating domain

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041755.1 Reference Mmul_10 Primary Assembly

      Range
      119438137..119769061
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028843151.1 → XP_028698984.1  synaptoporin isoform X1

      UniProtKB/TrEMBL
      G7MKY6, H9FQ00
      Related
      ENSMMUP00000075676.1, ENSMMUT00000088933.1
      Conserved Domains (1) summary
      pfam01284
      Location:16 → 216
      MARVEL; Membrane-associating domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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