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    GTF2H5 general transcription factor IIH subunit 5 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 700107, updated on 17-Aug-2024

    Summary

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    Official Symbol
    GTF2H5provided by VGNC
    Official Full Name
    general transcription factor IIH subunit 5provided by VGNC
    Primary source
    VGNC:VGNC:73211
    Locus tag
    EGK_03881
    See related
    Ensembl:ENSMMUG00000049294
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See GTF2H5 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (64507618..64519258)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (107775443..107787086, complement)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106998068 Neighboring gene synaptojanin 2 Neighboring gene serine active site containing 1 Neighboring gene signal recognition particle subunit SRP72-like Neighboring gene TUB like protein 4 Neighboring gene uncharacterized LOC114677531

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the Macaca mulatta transcriptome and the sequence divergence between Macaca and human. Magness CL, et al. Genome Biol, 2005. PMID 15998449, Free PMC Article
    2. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in nucleotide-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleotide-excision repair, preincision complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription factor TFIIH core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription factor TFIIH holo complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    general transcription factor IIH subunit 5
    Names
    general transcription factor IIH, polypeptide 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001190969.1 → NP_001177898.1  general transcription factor IIH subunit 5

      See identical proteins and their annotated locations for NP_001177898.1

      Status: VALIDATED

      Source sequence(s)
      CN642408
      UniProtKB/TrEMBL
      A0A5F7ZGK5, A0A8J8YQS1, F7FPD2
      Conserved Domains (1) summary
      pfam06331
      Location:1 → 69
      Tfb5; Transcription factor TFIIH complex subunit Tfb5

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      64507618..64519258
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015137050.2 → XP_014992536.1  general transcription factor IIH subunit 5 isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZGK5, A0A8J8YQS1, F7FPD2
      Related
      ENSMMUP00000063755.1, ENSMMUT00000103388.1
      Conserved Domains (1) summary
      pfam06331
      Location:1 → 69
      Tfb5; Transcription factor TFIIH complex subunit Tfb5
    Nucleotide Protein
    Heading Accession and Version

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