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    PLXNC1 plexin C1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 711320, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PLXNC1provided by VGNC
    Official Full Name
    plexin C1provided by VGNC
    Primary source
    VGNC:VGNC:76190
    See related
    Ensembl:ENSMMUG00000018237
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PLXNC1 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (93956372..94115273)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (93961028..94120398)

    Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114670919 Neighboring gene REST corepressor 2 pseudogene Neighboring gene uncharacterized LOC114670921 Neighboring gene uncharacterized LOC114670920 Neighboring gene centrosomal protein 83 Neighboring gene uncharacterized LOC114670922

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of axonogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell shape IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of semaphorin receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plexin-C1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261691.1 → NP_001248620.1  plexin-C1 precursor

      See identical proteins and their annotated locations for NP_001248620.1

      Status: PROVISIONAL

      Source sequence(s)
      JV044254
      UniProtKB/TrEMBL
      A0A1D5Q4M3, F7E0G3
      Related
      ENSMMUP00000023974.4, ENSMMUT00000025627.4
      Conserved Domains (6) summary
      cd11246
      Location:44 → 453
      Sema_plexin_C1; The Sema domain, a protein interacting module, of Plexin C1
      smart00423
      Location:591 → 635
      PSI; domain found in Plexins, Semaphorins and Integrins
      smart00429
      Location:753 → 841
      IPT; ig-like, plexins, transcription factors
      pfam01437
      Location:454 → 507
      PSI; Plexin repeat
      pfam01833
      Location:664 → 750
      TIG; IPT/TIG domain
      pfam08337
      Location:1012 → 1535
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041764.1 Reference Mmul_10 Primary Assembly

      Range
      93956372..94115273
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015152392.2 → XP_015007878.1  plexin-C1 isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZPM3
      Conserved Domains (6) summary
      cd11246
      Location:44 → 453
      Sema_plexin_C1; The Sema domain, a protein interacting module, of Plexin C1
      smart00423
      Location:591 → 635
      PSI; domain found in Plexins, Semaphorins and Integrins
      smart00429
      Location:753 → 841
      IPT; ig-like, plexins, transcription factors
      pfam01437
      Location:454 → 507
      PSI; Plexin repeat
      pfam01833
      Location:664 → 750
      TIG; IPT/TIG domain
      pfam08337
      Location:1012 → 1522
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain

    2. XM_028828947.1 → XP_028684780.1  plexin-C1 isoform X3

      UniProtKB/TrEMBL
      A0A1D5RFS6, A0A5F8AH44
      Related
      ENSMMUP00000059170.2, ENSMMUT00000056318.2
      Conserved Domains (5) summary
      smart00423
      Location:407 → 460
      PSI; domain found in Plexins, Semaphorins and Integrins
      smart00429
      Location:706 → 794
      IPT; ig-like, plexins, transcription factors
      pfam01833
      Location:617 → 703
      TIG; IPT/TIG domain
      pfam08337
      Location:965 → 1488
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain
      cl15693
      Location:44 → 406
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    3. XM_015152391.2 → XP_015007877.1  plexin-C1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q4M3, A0A1D5QHF5
      Related
      ENSMMUP00000047476.2, ENSMMUT00000063282.2
      Conserved Domains (6) summary
      cd11246
      Location:44 → 453
      Sema_plexin_C1; The Sema domain, a protein interacting module, of Plexin C1
      smart00423
      Location:591 → 635
      PSI; domain found in Plexins, Semaphorins and Integrins
      smart00429
      Location:753 → 841
      IPT; ig-like, plexins, transcription factors
      pfam01437
      Location:454 → 507
      PSI; Plexin repeat
      pfam01833
      Location:664 → 750
      TIG; IPT/TIG domain
      pfam08337
      Location:1012 → 1534
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    Nucleotide Protein
    Heading Accession and Version

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