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    ZKSCAN2 zinc finger with KRAB and SCAN domains 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 702285, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ZKSCAN2provided by VGNC
    Official Full Name
    zinc finger with KRAB and SCAN domains 2provided by VGNC
    Primary source
    VGNC:VGNC:79529
    See related
    Ensembl:ENSMMUG00000010470
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See ZKSCAN2 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (23588772..23613549, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (23948506..23971176, complement)

    Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene leucine carboxyl methyltransferase 1 Neighboring gene aquaporin 8 Neighboring gene uncharacterized LOC114674471 Neighboring gene nucleophosmin pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in central nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein with KRAB and SCAN domains 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041773.1 Reference Mmul_10 Primary Assembly

      Range
      23588772..23613549 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028841524.1 → XP_028697357.1  zinc finger protein with KRAB and SCAN domains 2 isoform X2

      UniProtKB/TrEMBL
      H9FTX7
      Conserved Domains (5) summary
      COG5048
      Location:764 → 950
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:770 → 790
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:497 → 582
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
      cl02581
      Location:234 → 289
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
      cl02605
      Location:42 → 142
      SCAN; SCAN oligomerization domain

    2. XM_001099539.4 → XP_001099539.1  zinc finger protein with KRAB and SCAN domains 2 isoform X1

      UniProtKB/TrEMBL
      F7BNI9, H9FTX7
      Related
      ENSMMUP00000013718.1, ENSMMUT00000014644.3
      Conserved Domains (8) summary
      cd07765
      Location:227 → 268
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
      smart00349
      Location:234 → 289
      KRAB; krueppel associated box
      COG5048
      Location:771 → 957
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:777 → 797
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:831 → 853
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:42 → 129
      SCAN; SCAN domain
      pfam13465
      Location:789 → 813
      zf-H2C2_2; Zinc-finger double domain
      pfam13837
      Location:340 → 421
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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