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    TAF11 TATA-box binding protein associated factor 11 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 718732, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TAF11provided by VGNC
    Official Full Name
    TATA-box binding protein associated factor 11provided by VGNC
    Primary source
    VGNC:VGNC:83477
    Locus tag
    EGK_14809
    See related
    Ensembl:ENSMMUG00000021715
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TAF11 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (134601521..134612002)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (35749296..35759793, complement)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106997922 Neighboring gene ankyrin repeat and sterile alpha motif domain containing 1A Neighboring gene 10 kDa heat shock protein, mitochondrial pseudogene Neighboring gene bridge-like lipid transfer protein family member 3A Neighboring gene histone H3.3C-like Neighboring gene uncharacterized LOC114677624 Neighboring gene small nuclear ribonucleoprotein polypeptide C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA polymerase II preinitiation complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription factor TFIID complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription initiation factor TFIID subunit 11
    Names
    TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261556.1 → NP_001248485.1  transcription initiation factor TFIID subunit 11

      See identical proteins and their annotated locations for NP_001248485.1

      Status: PROVISIONAL

      Source sequence(s)
      JV048064
      UniProtKB/TrEMBL
      A0A1D5QA17, A0A8J8Y7D5, G7MRS3
      Related
      ENSMMUP00000044885.1, ENSMMUT00000063689.2
      Conserved Domains (1) summary
      pfam04719
      Location:108 → 192
      TAFII28; hTAFII28-like protein conserved region

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      134601521..134612002
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028846872.1 → XP_028702705.1  transcription initiation factor TFIID subunit 11 isoform X1

      Conserved Domains (1) summary
      cl02176
      Location:108 → 137
      TAF11; TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
    Nucleotide Protein
    Heading Accession and Version

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