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    HACD4 3-hydroxyacyl-CoA dehydratase 4 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 711051, updated on 17-Aug-2024

    Summary

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    Official Symbol
    HACD4provided by VGNC
    Official Full Name
    3-hydroxyacyl-CoA dehydratase 4provided by VGNC
    Primary source
    VGNC:VGNC:73205
    Locus tag
    EGK_07669
    See related
    Ensembl:ENSMMUG00000019068
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    PTPLAD2
    Orthologs
    human mouse all
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    Genomic context

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    See HACD4 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (62625542..62662196)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (62911337..62947966)

    Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114672783 Neighboring gene interferon beta 1 Neighboring gene focadhesin Neighboring gene small nucleolar RNA SNORA30/SNORA37 family Neighboring gene microRNA mir-491

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3-hydroxyacyl-CoA dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sphingolipid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in very long-chain fatty acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4
    Names
    protein tyrosine phosphatase-like A domain containing 2
    NP_001181068.1
    XP_014973098.1
    XP_028690189.1
    XP_028690191.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194139.3 → NP_001181068.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4

      See identical proteins and their annotated locations for NP_001181068.1

      Status: PROVISIONAL

      Source sequence(s)
      QNVO02000140
      UniProtKB/TrEMBL
      A0A5F8A121, A0A8J8Y1D6, F6QLA6, G7NFX2
      Conserved Domains (1) summary
      pfam04387
      Location:65 → 223
      PTPLA; Protein tyrosine phosphatase-like protein, PTPLA

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041768.1 Reference Mmul_10 Primary Assembly

      Range
      62625542..62662196
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028834358.1 → XP_028690191.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 isoform X3

      Conserved Domains (1) summary
      pfam04387
      Location:65 → 276
      PTPLA; Protein tyrosine phosphatase-like protein, PTPLA

    2. XM_015117612.2 → XP_014973098.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 isoform X1

      UniProtKB/TrEMBL
      A0A5F8A121, A0A8J8Y1D6, F6QLA6, G7NFX2
      Related
      ENSMMUP00000070630.1, ENSMMUT00000084529.1
      Conserved Domains (1) summary
      pfam04387
      Location:65 → 223
      PTPLA; Protein tyrosine phosphatase-like protein, PTPLA

    3. XM_028834356.1 → XP_028690189.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 isoform X2

      UniProtKB/TrEMBL
      F6QLA6
      Related
      ENSMMUP00000025066.2, ENSMMUT00000026791.3
      Conserved Domains (1) summary
      pfam04387
      Location:28 → 186
      PTPLA; Protein tyrosine phosphatase-like protein, PTPLA
    Nucleotide Protein
    Heading Accession and Version

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