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    COL6A1 collagen type VI alpha 1 chain [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 721855, updated on 17-Aug-2024

    Summary

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    Official Symbol
    COL6A1provided by VGNC
    Official Full Name
    collagen type VI alpha 1 chainprovided by VGNC
    Primary source
    VGNC:VGNC:82084
    See related
    Ensembl:ENSMMUG00000000544
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See COL6A1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    35
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (774273..796717, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (766507..788899, complement)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene formimidoyltransferase cyclodeaminase Neighboring gene collagen type VI alpha 2 chain Neighboring gene uncharacterized LOC114676696 Neighboring gene poly(rC) binding protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Elevated gene expression levels distinguish human from non-human primate brains. Cáceres M, et al. Proc Natl Acad Sci U S A, 2003 Oct 28. PMID 14557539, Free PMC Article
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    collagen alpha-1(VI) chain
    Names
    type IV collagen alpha 1 subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      774273..796717 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015132686.2 → XP_014988172.1  collagen alpha-1(VI) chain

      UniProtKB/TrEMBL
      F6ZXR6, H9Z5B0, I0FP93
      Related
      ENSMMUP00000000736.4, ENSMMUT00000000795.4
      Conserved Domains (2) summary
      pfam01391
      Location:257 → 315
      Collagen; Collagen triple helix repeat (20 copies)
      cd01480
      Location:826 → 1011
      vWA_collagen_alpha_1-VI-type; VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...
    Nucleotide Protein
    Heading Accession and Version

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