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    LHX1 LIM homeobox 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 714101, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LHX1provided by VGNC
    Official Full Name
    LIM homeobox 1provided by VGNC
    Primary source
    VGNC:VGNC:82173
    Locus tag
    EGK_08621
    See related
    Ensembl:ENSMMUG00000021668
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See LHX1 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (34167029..34174803, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (42948347..42956119)

    Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene acetyl-CoA carboxylase alpha Neighboring gene uncharacterized LOC106994023 Neighboring gene apoptosis antagonizing transcription factor Neighboring gene uncharacterized LOC106994020 Neighboring gene uncharacterized LOC114673110 Neighboring gene uncharacterized LOC114673111

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LIM/homeobox protein Lhx1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041769.1 Reference Mmul_10 Primary Assembly

      Range
      34167029..34174803 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015119459.2 → XP_014974945.1  LIM/homeobox protein Lhx1

      UniProtKB/TrEMBL
      A0A5F7ZU36, A0A5S6RCI3, A0A8J8XTP5, F7F4Z5, G7NI09
      Related
      ENSMMUP00000062768.1, ENSMMUT00000092712.1
      Conserved Domains (4) summary
      cd09367
      Location:4 → 55
      LIM1_Lhx1_Lhx5; The first LIM domain of Lhx1 (also known as Lim1) and Lhx5
      cd09375
      Location:63 → 118
      LIM2_Lhx1_Lhx5; The second LIM domain of Lhx1 (also known as Lim1) and Lhx5
      PRK14086
      Location:263 → 382
      dnaA; chromosomal replication initiator protein DnaA
      pfam00046
      Location:183 → 237
      Homeobox; Homeobox domain

    2. XM_028836227.1 → XP_028692060.1  LIM/homeobox protein Lhx1

      UniProtKB/TrEMBL
      A0A5F7ZU36, A0A5S6RCI3, A0A8J8XTP5, F7F4Z5, G7NI09
      Related
      ENSMMUP00000028533.4, ENSMMUT00000030491.4
      Conserved Domains (4) summary
      cd09367
      Location:4 → 55
      LIM1_Lhx1_Lhx5; The first LIM domain of Lhx1 (also known as Lim1) and Lhx5
      cd09375
      Location:63 → 118
      LIM2_Lhx1_Lhx5; The second LIM domain of Lhx1 (also known as Lim1) and Lhx5
      PRK14086
      Location:263 → 382
      dnaA; chromosomal replication initiator protein DnaA
      pfam00046
      Location:183 → 237
      Homeobox; Homeobox domain

    3. XM_028836226.1 → XP_028692059.1  LIM/homeobox protein Lhx1

      UniProtKB/TrEMBL
      A0A5F7ZU36, A0A5S6RCI3, A0A8J8XTP5, F7F4Z5, G7NI09
      Conserved Domains (4) summary
      cd09367
      Location:4 → 55
      LIM1_Lhx1_Lhx5; The first LIM domain of Lhx1 (also known as Lim1) and Lhx5
      cd09375
      Location:63 → 118
      LIM2_Lhx1_Lhx5; The second LIM domain of Lhx1 (also known as Lim1) and Lhx5
      PRK14086
      Location:263 → 382
      dnaA; chromosomal replication initiator protein DnaA
      pfam00046
      Location:183 → 237
      Homeobox; Homeobox domain
    Nucleotide Protein
    Heading Accession and Version

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