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    LARP1 La ribonucleoprotein 1, translational regulator [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 714714, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LARP1provided by VGNC
    Official Full Name
    La ribonucleoprotein 1, translational regulatorprovided by VGNC
    Primary source
    VGNC:VGNC:74160
    Locus tag
    EGK_17058
    See related
    Ensembl:ENSMMUG00000009411
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See LARP1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (152083213..152222993)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (152783257..152923922)

    Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene corepressor interacting with RBPJ 1 pseudogene Neighboring gene ubiquitin-conjugating enzyme E2 L3 pseudogene Neighboring gene uncharacterized LOC106999009 Neighboring gene fatty acid hydroxylase domain containing 2 Neighboring gene small nuclear ribonucleoprotein G pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA cap binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA stabilization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    la-related protein 1
    Names
    La ribonucleoprotein domain family member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041759.1 Reference Mmul_10 Primary Assembly

      Range
      152083213..152222993
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015141309.2 → XP_014996795.1  la-related protein 1 isoform X4

      Conserved Domains (2) summary
      smart00684
      Location:723 → 761
      DM15; Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function
      cd08037
      Location:199 → 271
      LARP_1; La RNA-binding domain of La-related protein 1

    2. XM_028849860.1 → XP_028705693.1  la-related protein 1 isoform X5

      Conserved Domains (2) summary
      smart00684
      Location:690 → 728
      DM15; Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function
      cl02755
      Location:166 → 238
      LAM; LA motif RNA-binding domain

    3. XM_028849857.1 → XP_028705690.1  la-related protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QA34
      Conserved Domains (3) summary
      smart00684
      Location:928 → 966
      DM15; Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function
      cd08037
      Location:404 → 476
      LARP_1; La RNA-binding domain of La-related protein 1
      PHA03247
      Location:29 → 328
      PHA03247; large tegument protein UL36; Provisional

    4. XM_028849858.1 → XP_028705691.1  la-related protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A1D5QA34
      Conserved Domains (3) summary
      smart00684
      Location:919 → 957
      DM15; Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function
      cd08037
      Location:404 → 476
      LARP_1; La RNA-binding domain of La-related protein 1
      PHA03247
      Location:29 → 328
      PHA03247; large tegument protein UL36; Provisional

    5. XM_028849859.1 → XP_028705692.1  la-related protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A1D5QA34, F6TX43
      Related
      ENSMMUP00000033813.3, ENSMMUT00000040787.3
      Conserved Domains (3) summary
      smart00684
      Location:895 → 933
      DM15; Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function
      cd08037
      Location:371 → 443
      LARP_1; La RNA-binding domain of La-related protein 1
      PHA03247
      Location:29 → 326
      PHA03247; large tegument protein UL36; Provisional

    6. XM_015141307.2 → XP_014996793.1  la-related protein 1 isoform X4

      Related
      ENSMMUP00000012318.4, ENSMMUT00000013142.4
      Conserved Domains (2) summary
      smart00684
      Location:723 → 761
      DM15; Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function
      cd08037
      Location:199 → 271
      LARP_1; La RNA-binding domain of La-related protein 1
    Nucleotide Protein
    Heading Accession and Version

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