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    CRNKL1 crooked neck pre-mRNA splicing factor 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 699931, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CRNKL1provided by VGNC
    Official Full Name
    crooked neck pre-mRNA splicing factor 1provided by VGNC
    Primary source
    VGNC:VGNC:71412
    See related
    Ensembl:ENSMMUG00000007709
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CRNKL1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (46438299..46457812)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (53185915..53204734, complement)

    Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114670436 Neighboring gene uncharacterized LOC114670437 Neighboring gene cilia and flagella associated protein 61 Neighboring gene U6 spliceosomal RNA Neighboring gene N-alpha-acetyltransferase 20, NatB catalytic subunit Neighboring gene Ras and Rab interactor 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spliceosomal complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Prp19 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of post-mRNA release spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    crooked neck-like protein 1
    Names
    crooked neck-like protein 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041763.1 Reference Mmul_10 Primary Assembly

      Range
      46438299..46457812
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015149577.2 → XP_015005063.1  crooked neck-like protein 1

      UniProtKB/TrEMBL
      F6T9A8, G7N328
      Related
      ENSMMUP00000037420.1, ENSMMUT00000044404.3
      Conserved Domains (4) summary
      pfam02184
      Location:196 → 227
      HAT; HAT (Half-A-TPR) repeat
      sd00006
      Location:84 → 109
      TPR; TPR repeat [structural motif]
      cl26712
      Location:64 → 195
      U3_assoc_6; U3 small nucleolar RNA-associated protein 6
      cl26993
      Location:318 → 527
      Suf; Suppressor of forked protein (Suf)
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials