U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    EPHA1 EPH receptor A1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 706295, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    EPHA1provided by VGNC
    Official Full Name
    EPH receptor A1provided by VGNC
    Primary source
    VGNC:VGNC:108400
    See related
    Ensembl:ENSMMUG00000055322
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See EPHA1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (169985599..170003048, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (169991452..170008907, complement)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 131 member B Neighboring gene FAM131B antisense RNA 2 Neighboring gene zyxin Neighboring gene taste receptor type 2 member 62 Neighboring gene taste 2 receptor member 60

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane-ephrin receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ephrin type-A receptor 1
    XP_001090564.1
    XP_014990615.1
    XP_028702243.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      169985599..170003048 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001090564.4 → XP_001090564.1  ephrin type-A receptor 1 isoform X1

      UniProtKB/TrEMBL
      A0A5F8ANL5, G7MN62
      Related
      ENSMMUP00000078550.1, ENSMMUT00000094671.1
      Conserved Domains (7) summary
      cd09542
      Location:914 → 976
      SAM_EPH-A1; SAM domain of EPH-A1 subfamily of tyrosine kinase receptors
      smart00454
      Location:913 → 978
      SAM; Sterile alpha motif
      cd10479
      Location:27 → 203
      EphR_LBD_A1; Ligand Binding Domain of Ephrin type-A Receptor 1
      cd00063
      Location:449 → 537
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:336 → 433
      fn3; Fibronectin type III domain
      pfam07714
      Location:631 → 882
      Pkinase_Tyr; Protein tyrosine kinase
      cl21453
      Location:621 → 886
      PKc_like; Protein Kinases, catalytic domain

    2. XM_015135129.2 → XP_014990615.1  ephrin type-A receptor 1 isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZMR9
      Related
      ENSMMUP00000066929.1, ENSMMUT00000105233.1
      Conserved Domains (7) summary
      cd09542
      Location:822 → 884
      SAM_EPH-A1; SAM domain of EPH-A1 subfamily of tyrosine kinase receptors
      smart00454
      Location:821 → 886
      SAM; Sterile alpha motif
      cd00063
      Location:357 → 445
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:244 → 341
      fn3; Fibronectin type III domain
      pfam07714
      Location:539 → 790
      Pkinase_Tyr; Protein tyrosine kinase
      cl02704
      Location:27 → 190
      EphR_LBD; Ligand Binding Domain of Ephrin Receptors
      cl21453
      Location:529 → 794
      PKc_like; Protein Kinases, catalytic domain

    3. XM_028846410.1 → XP_028702243.1  ephrin type-A receptor 1 isoform X3

      UniProtKB/TrEMBL
      G7MN62
      Conserved Domains (6) summary
      cd09542
      Location:884 → 946
      SAM_EPH-A1; SAM domain of EPH-A1 subfamily of tyrosine kinase receptors
      cd10479
      Location:1 → 173
      EphR_LBD_A1; Ligand Binding Domain of Ephrin type-A Receptor 1
      cd00063
      Location:419 → 507
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:306 → 397
      fn3; Fibronectin type III domain
      pfam14575
      Location:558 → 591
      EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
      cl21453
      Location:591 → 856
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.