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    CCDC88A coiled-coil domain containing 88A [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 717103, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CCDC88Aprovided by VGNC
    Official Full Name
    coiled-coil domain containing 88Aprovided by VGNC
    Primary source
    VGNC:VGNC:70860
    See related
    Ensembl:ENSMMUG00000003003
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CCDC88A in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    33
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 13 NC_041766.1 (53224620..53355495)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 13 NC_027905.1 (56271712..56402459, complement)

    Chromosome 13 - NC_041766.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene transcription factor BTF3 pseudogene Neighboring gene uncharacterized LOC106992953 Neighboring gene putative prolyl-tRNA synthetase associated domain-containing protein 1 Neighboring gene mitochondrial translational initiation factor 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables dynein light intermediate chain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic microtubule organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cytoskeleton-dependent intracellular transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    girdin
    Names
    girdin-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041766.1 Reference Mmul_10 Primary Assembly

      Range
      53224620..53355495
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015112380.2 → XP_014967866.1  girdin isoform X1

      UniProtKB/TrEMBL
      A0A1D5RJS9
      Related
      ENSMMUP00000073604.1, ENSMMUT00000103463.1
      Conserved Domains (3) summary
      PRK02224
      Location:201 → 713
      PRK02224; DNA double-strand break repair Rad50 ATPase
      COG1196
      Location:474 → 1331
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd22229
      Location:10 → 165
      HkD_Girdin; Hook domain found in Girdin and similar proteins

    2. XM_015112386.2 → XP_014967872.1  girdin isoform X5

      UniProtKB/TrEMBL
      G7NA33, H9EUB1
      Conserved Domains (2) summary
      COG1196
      Location:474 → 1308
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam05622
      Location:18 → 586
      HOOK; HOOK protein

    3. XM_015112384.2 → XP_014967870.1  girdin isoform X3

      UniProtKB/TrEMBL
      G7NA33
      Conserved Domains (2) summary
      COG1196
      Location:474 → 1330
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam05622
      Location:18 → 586
      HOOK; HOOK protein

    4. XM_015112391.2 → XP_014967877.1  girdin isoform X8

      UniProtKB/TrEMBL
      A0A1D5QD37
      Conserved Domains (2) summary
      COG1196
      Location:474 → 1307
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam05622
      Location:18 → 586
      HOOK; HOOK protein

    5. XM_015112381.2 → XP_014967867.1  girdin isoform X2

      UniProtKB/TrEMBL
      G7NA33, H9FWZ4
      Conserved Domains (2) summary
      COG1196
      Location:474 → 1331
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam05622
      Location:18 → 586
      HOOK; HOOK protein

    6. XM_015112382.2 → XP_014967868.1  girdin isoform X2

      UniProtKB/TrEMBL
      G7NA33, H9FWZ4
      Related
      ENSMMUP00000045956.2, ENSMMUT00000071348.2
      Conserved Domains (2) summary
      COG1196
      Location:474 → 1331
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam05622
      Location:18 → 586
      HOOK; HOOK protein

    7. XM_015112389.2 → XP_014967875.1  girdin isoform X6

      UniProtKB/TrEMBL
      A0A1D5QD37
      Conserved Domains (2) summary
      COG1196
      Location:474 → 1308
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam05622
      Location:18 → 586
      HOOK; HOOK protein

    8. XM_015112390.2 → XP_014967876.1  girdin isoform X7

      UniProtKB/TrEMBL
      A0A1D5QD37
      Conserved Domains (2) summary
      COG1196
      Location:474 → 1308
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam05622
      Location:18 → 586
      HOOK; HOOK protein

    9. XM_015112385.2 → XP_014967871.1  girdin isoform X4

      UniProtKB/TrEMBL
      G7NA33
      Conserved Domains (2) summary
      COG1196
      Location:474 → 1308
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam05622
      Location:18 → 586
      HOOK; HOOK protein

    10. XM_015112388.2 → XP_014967874.1  girdin isoform X5

      UniProtKB/TrEMBL
      G7NA33, H9EUB1
      Conserved Domains (2) summary
      COG1196
      Location:474 → 1308
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam05622
      Location:18 → 586
      HOOK; HOOK protein
    Nucleotide Protein
    Heading Accession and Version

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