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    NLGN1 neuroligin 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 693541, updated on 17-Aug-2024

    Summary

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    Official Symbol
    NLGN1provided by VGNC
    Official Full Name
    neuroligin 1provided by VGNC
    Primary source
    VGNC:VGNC:75174
    Locus tag
    EGK_11892
    See related
    Ensembl:ENSMMUG00000004671
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See NLGN1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (78404863..79305883)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (119338870..120293928, complement)

    Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene spermatogenesis associated 16 Neighboring gene microRNA mir-7182 Neighboring gene U6 spliceosomal RNA Neighboring gene thioredoxin pseudogene Neighboring gene 60S ribosomal protein L8 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables neurexin family protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in modulation of chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neuron cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in postsynaptic membrane assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in presynaptic membrane assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic vesicle endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell surface IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic specialization membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    neuroligin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257734.1 → NP_001244663.1  neuroligin-1

      See identical proteins and their annotated locations for NP_001244663.1

      Status: PROVISIONAL

      Source sequence(s)
      JU321927
      UniProtKB/TrEMBL
      A0A8J8YL69, F6RUI6, G7MJ99
      Related
      ENSMMUP00000006211.2, ENSMMUT00000006602.4
      Conserved Domains (1) summary
      pfam00135
      Location:53 → 606
      COesterase; Carboxylesterase family

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041755.1 Reference Mmul_10 Primary Assembly

      Range
      78404863..79305883
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028843073.1 → XP_028698906.1  neuroligin-1 isoform X1

      Conserved Domains (1) summary
      pfam00135
      Location:53 → 626
      COesterase; Carboxylesterase family

    2. XM_028843074.1 → XP_028698907.1  neuroligin-1 isoform X2

      Conserved Domains (1) summary
      pfam00135
      Location:53 → 626
      COesterase; Carboxylesterase family

    3. XM_015131524.2 → XP_014987010.1  neuroligin-1 isoform X4

      UniProtKB/TrEMBL
      A0A8J8YL69, F6RUI6, G7MJ99
      Conserved Domains (1) summary
      pfam00135
      Location:53 → 606
      COesterase; Carboxylesterase family

    4. XM_028843078.1 → XP_028698911.1  neuroligin-1 isoform X5

      Conserved Domains (1) summary
      pfam00135
      Location:53 → 597
      COesterase; Carboxylesterase family

    5. XM_028843072.1 → XP_028698905.1  neuroligin-1 isoform X1

      Conserved Domains (1) summary
      pfam00135
      Location:53 → 626
      COesterase; Carboxylesterase family

    6. XM_028843071.1 → XP_028698904.1  neuroligin-1 isoform X1

      Conserved Domains (1) summary
      pfam00135
      Location:53 → 626
      COesterase; Carboxylesterase family

    7. XM_028843075.1 → XP_028698908.1  neuroligin-1 isoform X1

      Conserved Domains (1) summary
      pfam00135
      Location:53 → 626
      COesterase; Carboxylesterase family

    8. XM_028843077.1 → XP_028698910.1  neuroligin-1 isoform X4

      UniProtKB/TrEMBL
      A0A8J8YL69, F6RUI6, G7MJ99
      Conserved Domains (1) summary
      pfam00135
      Location:53 → 606
      COesterase; Carboxylesterase family

    9. XM_015131521.2 → XP_014987007.1  neuroligin-1 isoform X4

      UniProtKB/TrEMBL
      A0A8J8YL69, F6RUI6, G7MJ99
      Conserved Domains (1) summary
      pfam00135
      Location:53 → 606
      COesterase; Carboxylesterase family

    10. XM_015131526.2 → XP_014987012.1  neuroligin-1 isoform X4

      UniProtKB/TrEMBL
      A0A8J8YL69, F6RUI6, G7MJ99
      Conserved Domains (1) summary
      pfam00135
      Location:53 → 606
      COesterase; Carboxylesterase family

    11. XM_028843079.1 → XP_028698912.1  neuroligin-1 isoform X5

      Conserved Domains (1) summary
      pfam00135
      Location:53 → 597
      COesterase; Carboxylesterase family

    12. XM_028843069.1 → XP_028698902.1  neuroligin-1 isoform X1

      Conserved Domains (1) summary
      pfam00135
      Location:53 → 626
      COesterase; Carboxylesterase family

    13. XM_028843070.1 → XP_028698903.1  neuroligin-1 isoform X2

      Conserved Domains (1) summary
      pfam00135
      Location:53 → 626
      COesterase; Carboxylesterase family

    14. XM_028843076.1 → XP_028698909.1  neuroligin-1 isoform X3

      Conserved Domains (1) summary
      pfam00135
      Location:53 → 617
      COesterase; Carboxylesterase family

    15. XM_015131527.2 → XP_014987013.1  neuroligin-1 isoform X5

      Conserved Domains (1) summary
      pfam00135
      Location:53 → 597
      COesterase; Carboxylesterase family

    16. XM_015131520.2 → XP_014987006.1  neuroligin-1 isoform X4

      UniProtKB/TrEMBL
      A0A8J8YL69, F6RUI6, G7MJ99
      Conserved Domains (1) summary
      pfam00135
      Location:53 → 606
      COesterase; Carboxylesterase family
    Nucleotide Protein
    Heading Accession and Version

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