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    THBS2 thrombospondin 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 708165, updated on 17-Aug-2024

    Summary

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    Official Symbol
    THBS2provided by VGNC
    Official Full Name
    thrombospondin 2provided by VGNC
    Primary source
    VGNC:VGNC:104433
    See related
    Ensembl:ENSMMUG00000051514
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See THBS2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (1374922..1414298)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (171182510..171220485, complement)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene chromosome 4 C6orf120 homolog Neighboring gene WD repeat domain 27 Neighboring gene uncharacterized LOC106998212 Neighboring gene uncharacterized LOC106998210 Neighboring gene uncharacterized LOC114677368

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of angiogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thrombospondin-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      1374922..1414298
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015137723.2 → XP_014993209.2  thrombospondin-2

      UniProtKB/TrEMBL
      A0A5F8A6G6, G7MR81
      Related
      ENSMMUP00000072957.1, ENSMMUT00000106945.1
      Conserved Domains (10) summary
      smart00209
      Location:497 → 549
      TSP1; Thrombospondin type 1 repeats
      smart00210
      Location:20 → 215
      TSPN; Thrombospondin N-terminal -like domains
      sd00001
      Location:847 → 884
      TSP3; TSP3 repeat_long [structural motif]
      sd00002
      Location:789 → 823
      TSP3; TSP3 repeat_long [structural motif]
      sd00003
      Location:693 → 728
      TSP3_1C; TSP3 repeat_1C [structural motif]
      pfam00093
      Location:320 → 374
      VWC; von Willebrand factor type C domain
      pfam02412
      Location:847 → 884
      TSP_3; Thrombospondin type 3 repeat
      pfam00090
      Location:385 → 430
      TSP_1; Thrombospondin type 1 domain
      pfam05735
      Location:974 → 1171
      TSP_C; Thrombospondin C-terminal region
      pfam12947
      Location:652 → 691
      EGF_3; EGF domain
    Nucleotide Protein
    Heading Accession and Version

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