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    DCHS1 dachsous cadherin-related 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 711938, updated on 17-Aug-2024

    Summary

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    Official Symbol
    DCHS1provided by VGNC
    Official Full Name
    dachsous cadherin-related 1provided by VGNC
    Primary source
    VGNC:VGNC:71619
    See related
    Ensembl:ENSMMUG00000007754
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See DCHS1 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (59285142..59318855)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (60139575..60159151)

    Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene interferon-induced very large GTPase 1-like Neighboring gene mitochondrial ribosomal protein L17 Neighboring gene tripeptidyl peptidase 1 Neighboring gene TATA-box binding protein associated factor 10 Neighboring gene integrin linked kinase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell-cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protocadherin-16
    Names
    dachsous 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041767.1 Reference Mmul_10 Primary Assembly

      Range
      59285142..59318855
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028833752.1 → XP_028689585.1  protocadherin-16 isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q6M1
      Conserved Domains (1) summary
      cd11304
      Location:1111 → 1204
      Cadherin_repeat; Cadherin tandem repeat domain

    2. XM_015114958.2 → XP_014970444.2  protocadherin-16 isoform X2

      UniProtKB/TrEMBL
      A0A1D5Q6M1, F7BXD9
      Related
      ENSMMUP00000010188.3, ENSMMUT00000010861.4
      Conserved Domains (2) summary
      cd11304
      Location:1037 → 1130
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:8 → 64
      CA; Cadherin repeats
    Nucleotide Protein
    Heading Accession and Version

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