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    SND1 staphylococcal nuclease and tudor domain containing 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 699542, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SND1provided by VGNC
    Official Full Name
    staphylococcal nuclease and tudor domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:77798
    Locus tag
    EGK_14102
    See related
    Ensembl:ENSMMUG00000015432
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SND1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (154121104..154559314)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (153898911..154337181)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene fascin actin-bundling protein 3 Neighboring gene paired box 4 Neighboring gene CD2 antigen cytoplasmic tail-binding protein 2 pseudogene Neighboring gene uncharacterized LOC114677022 Neighboring gene uncharacterized LOC114677021 Neighboring gene uncharacterized LOC114677023 Neighboring gene leucine rich repeat containing 4 Neighboring gene microRNA mir-593 Neighboring gene microRNA mir-129-1 Neighboring gene leptin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulatory ncRNA-mediated gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RISC complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    staphylococcal nuclease domain-containing protein 1
    XP_014990339.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      154121104..154559314
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015134853.2 → XP_014990339.1  staphylococcal nuclease domain-containing protein 1

      UniProtKB/TrEMBL
      A0A1D5RJ74, A0A663DBS8, A0A8J8YGX9, F6Q3Q6, G7MMA3
      Related
      ENSMMUP00000020240.3, ENSMMUT00000021638.4
      Conserved Domains (4) summary
      smart00318
      Location:21 → 166
      SNc; Staphylococcal nuclease homologues
      cd00175
      Location:350 → 496
      SNc; Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
      cd20433
      Location:703 → 785
      Tudor_TDRD11; Tudor domain found in Tudor domain-containing protein 11 (TDRD11) and similar proteins
      cl00140
      Location:844 → 895
      SNc; Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases
    Research Materials