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    SMPD2 sphingomyelin phosphodiesterase 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 698865, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SMPD2provided by VGNC
    Official Full Name
    sphingomyelin phosphodiesterase 2provided by VGNC
    Primary source
    VGNC:VGNC:104429
    Locus tag
    EGK_15455
    See related
    Ensembl:ENSMMUG00000050828
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SMPD2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (13105816..13112162)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (158498366..158501502, complement)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain-containing protein 162-like Neighboring gene 60S ribosomal protein L7-like 1 Neighboring gene CD164 molecule Neighboring gene peptidylprolyl isomerase like 6 Neighboring gene microtubule associated monooxygenase, calponin and LIM domain containing 1 Neighboring gene zinc finger and BTB domain containing 24 Neighboring gene adenylate kinase 9 Neighboring gene FIG4 phosphoinositide 5-phosphatase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sphingomyelin phosphodiesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sphingomyelin phosphodiesterase 2
    Names
    sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase)
    NP_001253789.1
    XP_028702507.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266860.1 → NP_001253789.1  sphingomyelin phosphodiesterase 2

      See identical proteins and their annotated locations for NP_001253789.1

      Status: PROVISIONAL

      Source sequence(s)
      JV043467
      UniProtKB/TrEMBL
      A0A8J8YKE9, F7EAJ0, G7MQX7
      Related
      ENSMMUP00000072739.1, ENSMMUT00000092879.1
      Conserved Domains (1) summary
      cl00490
      Location:14 → 279
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      13105816..13112162
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028846674.1 → XP_028702507.1  sphingomyelin phosphodiesterase 2 isoform X1

      UniProtKB/TrEMBL
      A0A5F8AUR5
      Related
      ENSMMUP00000081234.1, ENSMMUT00000099155.1
      Conserved Domains (1) summary
      cl00490
      Location:14 → 279
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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