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    SNX21 sorting nexin family member 21 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 709196, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SNX21provided by VGNC
    Official Full Name
    sorting nexin family member 21provided by VGNC
    Primary source
    VGNC:VGNC:77716
    See related
    Ensembl:ENSMMUG00000023515
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SNX21 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (81013330..81023298)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (18673062..18682884, complement)

    Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene ubiquitin conjugating enzyme E2 C Neighboring gene troponin C2, fast skeletal type Neighboring gene acyl-CoA thioesterase 8 Neighboring gene zinc finger SWIM-type containing 3 Neighboring gene zinc finger SWIM-type containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in early endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sorting nexin-21

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041763.1 Reference Mmul_10 Primary Assembly

      Range
      81013330..81023298
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015148926.2 → XP_015004412.1  sorting nexin-21 isoform X3

      UniProtKB/TrEMBL
      F7G1J5
      Conserved Domains (1) summary
      cl02563
      Location:133 → 151
      PX_domain; The Phox Homology domain, a phosphoinositide binding module

    2. XM_001106730.4 → XP_001106730.1  sorting nexin-21 isoform X1

      See identical proteins and their annotated locations for XP_001106730.1

      UniProtKB/TrEMBL
      A0A1D5R0H8, F7DXI2
      Related
      ENSMMUP00000030953.4, ENSMMUT00000033080.4
      Conserved Domains (3) summary
      cd07301
      Location:133 → 244
      PX_SNX21; The phosphoinositide binding Phox Homology domain of Sorting Nexin 21
      sd00006
      Location:246 → 270
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:246 → 315
      TPR_12; Tetratricopeptide repeat

    3. XM_015148927.2 → XP_015004413.1  sorting nexin-21 isoform X4

      Conserved Domains (1) summary
      cl02563
      Location:133 → 148
      PX_domain; The Phox Homology domain, a phosphoinositide binding module

    4. XM_015148925.2 → XP_015004411.1  sorting nexin-21 isoform X2

      Conserved Domains (3) summary
      sd00006
      Location:174 → 198
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:177 → 242
      TPR_12; Tetratricopeptide repeat
      cl02563
      Location:65 → 172
      PX_domain; The Phox Homology domain, a phosphoinositide binding module
    Nucleotide Protein
    Heading Accession and Version

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