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    PAX6 paired box 6 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 695746, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PAX6provided by VGNC
    Official Full Name
    paired box 6provided by VGNC
    Primary source
    VGNC:VGNC:75765
    See related
    Ensembl:ENSMMUG00000016810
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PAX6 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (33625603..33658148)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (34087115..34119627)

    Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U3 Neighboring gene reticulocalbin 1 Neighboring gene uncharacterized LOC114672293 Neighboring gene elongator acetyltransferase complex subunit 4 Neighboring gene inner mitochondrial membrane peptidase subunit 1 Neighboring gene DnaJ heat shock protein family (Hsp40) member C24

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    paired box protein Pax-6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266257.1 → NP_001253186.1  paired box protein Pax-6

      See identical proteins and their annotated locations for NP_001253186.1

      Status: PROVISIONAL

      Source sequence(s)
      JU334738
      UniProtKB/TrEMBL
      G7NDN6, H9FV32
      Related
      ENSMMUP00000042722.2, ENSMMUT00000053490.2
      Conserved Domains (2) summary
      smart00351
      Location:4 → 128
      PAX; Paired Box domain
      pfam00046
      Location:214 → 267
      Homeobox; Homeobox domain

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041767.1 Reference Mmul_10 Primary Assembly

      Range
      33625603..33658148
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015114509.2 → XP_014969995.1  paired box protein Pax-6 isoform X2

      UniProtKB/TrEMBL
      G7NDN6, H9FV32
      Related
      ENSMMUP00000073243.1, ENSMMUT00000094381.1
      Conserved Domains (2) summary
      smart00351
      Location:4 → 128
      PAX; Paired Box domain
      pfam00046
      Location:214 → 267
      Homeobox; Homeobox domain

    2. XM_015114506.2 → XP_014969992.1  paired box protein Pax-6 isoform X1

      UniProtKB/TrEMBL
      F7C9W0, G7NDN6
      Conserved Domains (2) summary
      smart00351
      Location:4 → 142
      PAX; Paired Box domain
      pfam00046
      Location:228 → 281
      Homeobox; Homeobox domain

    3. XM_015114510.2 → XP_014969996.1  paired box protein Pax-6 isoform X2

      UniProtKB/TrEMBL
      G7NDN6, H9FV32
      Conserved Domains (2) summary
      smart00351
      Location:4 → 128
      PAX; Paired Box domain
      pfam00046
      Location:214 → 267
      Homeobox; Homeobox domain

    4. XM_028832518.1 → XP_028688351.1  paired box protein Pax-6 isoform X1

      UniProtKB/TrEMBL
      F7C9W0, G7NDN6
      Conserved Domains (2) summary
      smart00351
      Location:4 → 142
      PAX; Paired Box domain
      pfam00046
      Location:228 → 281
      Homeobox; Homeobox domain

    5. XM_028832520.1 → XP_028688353.1  paired box protein Pax-6 isoform X2

      UniProtKB/TrEMBL
      G7NDN6, H9FV32
      Conserved Domains (2) summary
      smart00351
      Location:4 → 128
      PAX; Paired Box domain
      pfam00046
      Location:214 → 267
      Homeobox; Homeobox domain

    6. XM_015114507.2 → XP_014969993.1  paired box protein Pax-6 isoform X1

      UniProtKB/TrEMBL
      F7C9W0, G7NDN6
      Related
      ENSMMUP00000067816.1, ENSMMUT00000082888.1
      Conserved Domains (2) summary
      smart00351
      Location:4 → 142
      PAX; Paired Box domain
      pfam00046
      Location:228 → 281
      Homeobox; Homeobox domain

    7. XM_028832521.1 → XP_028688354.1  paired box protein Pax-6 isoform X2

      UniProtKB/TrEMBL
      G7NDN6, H9FV32
      Conserved Domains (2) summary
      smart00351
      Location:4 → 128
      PAX; Paired Box domain
      pfam00046
      Location:214 → 267
      Homeobox; Homeobox domain

    8. XM_028832524.1 → XP_028688357.1  paired box protein Pax-6 isoform X3

      Conserved Domains (2) summary
      smart00351
      Location:4 → 167
      PAX; Paired Box domain
      pfam00046
      Location:253 → 305
      Homeobox; Homeobox domain

    9. XM_015114504.2 → XP_014969990.1  paired box protein Pax-6 isoform X1

      UniProtKB/TrEMBL
      F7C9W0, G7NDN6
      Conserved Domains (2) summary
      smart00351
      Location:4 → 142
      PAX; Paired Box domain
      pfam00046
      Location:228 → 281
      Homeobox; Homeobox domain

    10. XM_015114505.2 → XP_014969991.1  paired box protein Pax-6 isoform X1

      UniProtKB/TrEMBL
      F7C9W0, G7NDN6
      Related
      ENSMMUP00000022101.1, ENSMMUT00000023620.3
      Conserved Domains (2) summary
      smart00351
      Location:4 → 142
      PAX; Paired Box domain
      pfam00046
      Location:228 → 281
      Homeobox; Homeobox domain

    11. XM_015114508.2 → XP_014969994.1  paired box protein Pax-6 isoform X2

      UniProtKB/TrEMBL
      G7NDN6, H9FV32
      Related
      ENSMMUP00000069390.1, ENSMMUT00000100738.1
      Conserved Domains (2) summary
      smart00351
      Location:4 → 128
      PAX; Paired Box domain
      pfam00046
      Location:214 → 267
      Homeobox; Homeobox domain

    12. XM_028832519.1 → XP_028688352.1  paired box protein Pax-6 isoform X1

      UniProtKB/TrEMBL
      F7C9W0, G7NDN6
      Related
      ENSMMUP00000066625.1, ENSMMUT00000105098.1
      Conserved Domains (2) summary
      smart00351
      Location:4 → 142
      PAX; Paired Box domain
      pfam00046
      Location:228 → 281
      Homeobox; Homeobox domain

    13. XM_028832522.1 → XP_028688355.1  paired box protein Pax-6 isoform X2

      UniProtKB/TrEMBL
      G7NDN6, H9FV32
      Conserved Domains (2) summary
      smart00351
      Location:4 → 128
      PAX; Paired Box domain
      pfam00046
      Location:214 → 267
      Homeobox; Homeobox domain
    Nucleotide Protein
    Heading Accession and Version

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