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    CAPN6 calpain 6 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 706434, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CAPN6provided by VGNC
    Official Full Name
    calpain 6provided by VGNC
    Primary source
    VGNC:VGNC:70535
    Locus tag
    EGK_20831
    See related
    Ensembl:ENSMMUG00000015308
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    calpain-6
    Orthologs
    human mouse all
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    Genomic context

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    See CAPN6 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) X NC_041774.1 (107959423..107984698, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) X NC_027913.1 (105273819..105298996, complement)

    Chromosome X - NC_041774.1Genomic Context describing neighboring genes Neighboring gene chordin like 1 Neighboring gene p21 (RAC1) activated kinase 3 Neighboring gene doublecortin Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium-dependent cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calpain-6
    Names
    Calpamodulin
    calpain-6-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041774.1 Reference Mmul_10 Primary Assembly

      Range
      107959423..107984698 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015128023.2 → XP_014983509.1  calpain-6

      UniProtKB/TrEMBL
      A0A663DE46, A0A8J8YH84, F6Q6Z5, G7NT58, H9F082
      Related
      ENSMMUP00000020074.3, ENSMMUT00000021463.4
      Conserved Domains (3) summary
      smart00230
      Location:13 → 351
      CysPc; Calpain-like thiol protease family
      cd04046
      Location:514 → 639
      C2_Calpain; C2 domain present in Calpain proteins
      cd00214
      Location:349 → 497
      Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    Nucleotide Protein
    Heading Accession and Version

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