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    TNRC6B trinucleotide repeat containing adaptor 6B [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 704630, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TNRC6Bprovided by VGNC
    Official Full Name
    trinucleotide repeat containing adaptor 6Bprovided by VGNC
    Primary source
    VGNC:VGNC:79786
    Locus tag
    EGK_03069
    See related
    Ensembl:ENSMMUG00000021345
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TNRC6B in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (11195876..11494347, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (82048518..82348469)

    Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene small G protein signaling modulator 3 Neighboring gene adenylosuccinate lyase Neighboring gene uncharacterized LOC114670353 Neighboring gene 60S ribosomal protein L7-like Neighboring gene microRNA mir-7204 Neighboring gene family with sequence similarity 83 member F Neighboring gene GRB2 related adaptor protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in miRNA-mediated post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of nuclear-transcribed mRNA poly(A) tail shortening IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    trinucleotide repeat-containing gene 6B protein
    Names
    trinucleotide repeat containing 6B

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041763.1 Reference Mmul_10 Primary Assembly

      Range
      11195876..11494347 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028827691.1 → XP_028683524.1  trinucleotide repeat-containing gene 6B protein isoform X5

      UniProtKB/TrEMBL
      A0A5F8AFV1
      Conserved Domains (4) summary
      pfam10427
      Location:917 → 1048
      Ago_hook; Argonaute hook
      pfam16608
      Location:1342 → 1627
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
      cd12712
      Location:1629 → 1711
      RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
      NF033849
      Location:365 → 626
      ser_rich_anae_1; serine-rich protein

    2. XM_015150385.2 → XP_015005871.1  trinucleotide repeat-containing gene 6B protein isoform X1

      UniProtKB/TrEMBL
      F6XNM1
      Conserved Domains (4) summary
      pfam10427
      Location:958 → 1101
      Ago_hook; Argonaute hook
      pfam16608
      Location:1395 → 1680
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
      cd12712
      Location:1682 → 1764
      RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
      NF033849
      Location:365 → 626
      ser_rich_anae_1; serine-rich protein

    3. XM_015150392.2 → XP_015005878.1  trinucleotide repeat-containing gene 6B protein isoform X8

      UniProtKB/TrEMBL
      F7DLE2, H9Z6Q6
      Related
      ENSMMUP00000068152.1, ENSMMUT00000104202.1
      Conserved Domains (3) summary
      cd12712
      Location:1536 → 1618
      RRM_TNRC6B; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
      pfam10427
      Location:891 → 1002
      Ago_hook; Argonaute hook
      pfam16608
      Location:1249 → 1534
      TNRC6-PABC_bdg; TNRC6-PABC binding domain

    4. XM_001101111.4 → XP_001101111.2  trinucleotide repeat-containing gene 6B protein isoform X4

      See identical proteins and their annotated locations for XP_001101111.2

      UniProtKB/TrEMBL
      F6XNN3, H9Z6Q7
      Related
      ENSMMUP00000036987.3, ENSMMUT00000043984.3
      Conserved Domains (3) summary
      cd12712
      Location:1646 → 1728
      RRM_TNRC6B; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
      pfam10427
      Location:945 → 1055
      Ago_hook; Argonaute hook
      pfam16608
      Location:1359 → 1644
      TNRC6-PABC_bdg; TNRC6-PABC binding domain

    5. XM_028827690.1 → XP_028683523.1  trinucleotide repeat-containing gene 6B protein isoform X3

      UniProtKB/TrEMBL
      F6XNM1, G7N3X3
      Related
      ENSMMUP00000071752.1, ENSMMUT00000089850.1
      Conserved Domains (4) summary
      pfam10427
      Location:936 → 1079
      Ago_hook; Argonaute hook
      pfam16608
      Location:1373 → 1658
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
      cd12712
      Location:1660 → 1742
      RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
      NF033849
      Location:343 → 604
      ser_rich_anae_1; serine-rich protein

    6. XM_015150384.2 → XP_015005870.1  trinucleotide repeat-containing gene 6B protein isoform X1

      UniProtKB/TrEMBL
      F6XNM1
      Conserved Domains (4) summary
      pfam10427
      Location:958 → 1101
      Ago_hook; Argonaute hook
      pfam16608
      Location:1395 → 1680
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
      cd12712
      Location:1682 → 1764
      RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
      NF033849
      Location:365 → 626
      ser_rich_anae_1; serine-rich protein

    7. XM_028827693.1 → XP_028683526.1  trinucleotide repeat-containing gene 6B protein isoform X7

      UniProtKB/TrEMBL
      A0A5F8AEI7, A0A5F8AFV1
      Related
      ENSMMUP00000076298.1, ENSMMUT00000098602.1
      Conserved Domains (4) summary
      pfam10427
      Location:917 → 1048
      Ago_hook; Argonaute hook
      pfam16608
      Location:1285 → 1570
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
      cd12712
      Location:1572 → 1654
      RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
      NF033849
      Location:365 → 626
      ser_rich_anae_1; serine-rich protein

    8. XM_028827692.1 → XP_028683525.1  trinucleotide repeat-containing gene 6B protein isoform X6

      UniProtKB/TrEMBL
      F6XNM1
      Conserved Domains (4) summary
      pfam10427
      Location:958 → 1101
      Ago_hook; Argonaute hook
      pfam16608
      Location:1338 → 1623
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
      cd12712
      Location:1625 → 1707
      RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
      NF033849
      Location:365 → 626
      ser_rich_anae_1; serine-rich protein

    9. XM_028827689.1 → XP_028683522.1  trinucleotide repeat-containing gene 6B protein isoform X1

      UniProtKB/TrEMBL
      F6XNM1
      Conserved Domains (4) summary
      pfam10427
      Location:958 → 1101
      Ago_hook; Argonaute hook
      pfam16608
      Location:1395 → 1680
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
      cd12712
      Location:1682 → 1764
      RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
      NF033849
      Location:365 → 626
      ser_rich_anae_1; serine-rich protein

    10. XM_028827688.1 → XP_028683521.1  trinucleotide repeat-containing gene 6B protein isoform X1

      UniProtKB/TrEMBL
      F6XNM1
      Conserved Domains (4) summary
      pfam10427
      Location:958 → 1101
      Ago_hook; Argonaute hook
      pfam16608
      Location:1395 → 1680
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
      cd12712
      Location:1682 → 1764
      RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
      NF033849
      Location:365 → 626
      ser_rich_anae_1; serine-rich protein

    11. XM_028827687.1 → XP_028683520.1  trinucleotide repeat-containing gene 6B protein isoform X1

      UniProtKB/TrEMBL
      F6XNM1
      Conserved Domains (4) summary
      pfam10427
      Location:958 → 1101
      Ago_hook; Argonaute hook
      pfam16608
      Location:1395 → 1680
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
      cd12712
      Location:1682 → 1764
      RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
      NF033849
      Location:365 → 626
      ser_rich_anae_1; serine-rich protein

    12. XM_015150386.2 → XP_015005872.1  trinucleotide repeat-containing gene 6B protein isoform X2

      UniProtKB/TrEMBL
      F6XNM1
      Conserved Domains (3) summary
      cd12712
      Location:1680 → 1762
      RRM_TNRC6B; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
      pfam10427
      Location:979 → 1089
      Ago_hook; Argonaute hook
      pfam16608
      Location:1393 → 1678
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
    Nucleotide Protein
    Heading Accession and Version

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