U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    COL18A1 collagen type XVIII alpha 1 chain [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 721919, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    COL18A1provided by VGNC
    Official Full Name
    collagen type XVIII alpha 1 chainprovided by VGNC
    Primary source
    VGNC:VGNC:81291
    See related
    Ensembl:ENSMMUG00000004472
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See COL18A1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    42
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (1234897..1326278, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (1226310..1260000, complement)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene poly(rC) binding protein 3 Neighboring gene solute carrier family 19 member 1 Neighboring gene uncharacterized LOC114676697 Neighboring gene uncharacterized LOC106997214

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in basement membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    collagen alpha-1(XVIII) chain

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      1234897..1326278 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028845236.1 → XP_028701069.1  collagen alpha-1(XVIII) chain isoform X4

      UniProtKB/TrEMBL
      F7GIR5
      Related
      ENSMMUP00000005962.4, ENSMMUT00000006339.4
      Conserved Domains (2) summary
      pfam01391
      Location:456 → 507
      Collagen; Collagen triple helix repeat (20 copies)
      cd00247
      Location:979 → 1149
      Endostatin-like; Endostatin-like domain; the angiogenesis inhibitor endostatin is a C-terminal fragment of collagen XV/XVIII, a proteoglycan/collagen found in vessel walls and basement membranes; this domain has a compact globular fold similar to that of C-type lectins; ...

    2. XM_028845235.1 → XP_028701068.1  collagen alpha-1(XVIII) chain isoform X3

      UniProtKB/TrEMBL
      A0A1D5RH46, F7GIS1
      Related
      ENSMMUP00000005961.4, ENSMMUT00000006338.4
      Conserved Domains (4) summary
      pfam01391
      Location:821 → 872
      Collagen; Collagen triple helix repeat (20 copies)
      smart00210
      Location:221 → 409
      TSPN; Thrombospondin N-terminal -like domains
      cd00247
      Location:1343 → 1513
      Endostatin-like; Endostatin-like domain; the angiogenesis inhibitor endostatin is a C-terminal fragment of collagen XV/XVIII, a proteoglycan/collagen found in vessel walls and basement membranes; this domain has a compact globular fold similar to that of C-type lectins; ...
      pfam06121
      Location:23 → 194
      DUF959; Domain of Unknown Function (DUF959)

    3. XM_028845234.1 → XP_028701067.1  collagen alpha-1(XVIII) chain isoform X2

      UniProtKB/TrEMBL
      A0A1D5RH46
      Conserved Domains (4) summary
      pfam01391
      Location:821 → 872
      Collagen; Collagen triple helix repeat (20 copies)
      smart00210
      Location:221 → 409
      TSPN; Thrombospondin N-terminal -like domains
      cd00247
      Location:1344 → 1514
      Endostatin-like; Endostatin-like domain; the angiogenesis inhibitor endostatin is a C-terminal fragment of collagen XV/XVIII, a proteoglycan/collagen found in vessel walls and basement membranes; this domain has a compact globular fold similar to that of C-type lectins; ...
      pfam06121
      Location:23 → 194
      DUF959; Domain of Unknown Function (DUF959)

    4. XM_028845233.1 → XP_028701066.1  collagen alpha-1(XVIII) chain isoform X1

      UniProtKB/TrEMBL
      A0A1D5RH46
      Conserved Domains (5) summary
      cd07455
      Location:330 → 452
      CRD_Collagen_XVIII; Cysteine-rich domain of the variant 3 of collagen XVIII (V3C18 )
      pfam01391
      Location:1056 → 1107
      Collagen; Collagen triple helix repeat (20 copies)
      smart00210
      Location:456 → 644
      TSPN; Thrombospondin N-terminal -like domains
      cd00247
      Location:1578 → 1748
      Endostatin-like; Endostatin-like domain; the angiogenesis inhibitor endostatin is a C-terminal fragment of collagen XV/XVIII, a proteoglycan/collagen found in vessel walls and basement membranes; this domain has a compact globular fold similar to that of C-type lectins; ...
      pfam06121
      Location:23 → 194
      DUF959; Domain of Unknown Function (DUF959)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.