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    NPLOC4 NPL4 homolog, ubiquitin recognition factor [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 713927, updated on 17-Aug-2024

    Summary

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    Official Symbol
    NPLOC4provided by VGNC
    Official Full Name
    NPL4 homolog, ubiquitin recognition factorprovided by VGNC
    Primary source
    VGNC:VGNC:99190
    See related
    Ensembl:ENSMMUG00000001586
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See NPLOC4 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (77894644..77981377, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (75413444..75499164, complement)

    Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene fascin actin-bundling protein 2, retinal Neighboring gene FA core complex associated protein 100 Neighboring gene tetraspanin 10 Neighboring gene phosphodiesterase 6G Neighboring gene coiled-coil domain containing 137 Neighboring gene oxidoreductase like domain containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear protein localization protein 4 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041769.1 Reference Mmul_10 Primary Assembly

      Range
      77894644..77981377 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028836929.1 → XP_028692762.1  nuclear protein localization protein 4 homolog isoform X2

      UniProtKB/TrEMBL
      A0A1D5R7R2
      Related
      ENSMMUP00000067783.1, ENSMMUT00000079409.1
      Conserved Domains (4) summary
      sd00029
      Location:555 → 574
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam05020
      Location:105 → 245
      zf-NPL4; NPL4 family, putative zinc binding region
      pfam11543
      Location:6 → 79
      UN_NPL4; Nuclear pore localization protein NPL4
      cl13996
      Location:249 → 527
      MPN; Mpr1p, Pad1p N-terminal (MPN) domains

    2. XM_015120587.2 → XP_014976073.1  nuclear protein localization protein 4 homolog isoform X1

      UniProtKB/TrEMBL
      A0A1D5R7R2, F7GV67, H9FWY0
      Related
      ENSMMUP00000002117.3, ENSMMUT00000002241.4
      Conserved Domains (5) summary
      smart00547
      Location:584 → 606
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:584 → 603
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam05020
      Location:105 → 245
      zf-NPL4; NPL4 family, putative zinc binding region
      pfam05021
      Location:249 → 556
      NPL4; NPL4 family
      pfam11543
      Location:6 → 79
      UN_NPL4; Nuclear pore localization protein NPL4
    Nucleotide Protein
    Heading Accession and Version

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