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    COL4A3 collagen type IV alpha 3 chain [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 712444, updated on 17-Aug-2024

    Summary

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    Official Symbol
    COL4A3provided by VGNC
    Official Full Name
    collagen type IV alpha 3 chainprovided by VGNC
    Primary source
    VGNC:VGNC:81375
    See related
    Ensembl:ENSMMUG00000013235
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See COL4A3 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    52
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 12 NC_041765.1 (114612842..114761672)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 12 NC_027904.1 (109624048..109685882)

    Chromosome 12 - NC_041765.1Genomic Context describing neighboring genes Neighboring gene rhomboid domain containing 1 Neighboring gene small nucleolar RNA SNORA48 Neighboring gene collagen type IV alpha 4 chain Neighboring gene uncharacterized LOC114671434 Neighboring gene mitochondrial fission factor Neighboring gene transmembrane 4 L six family member 20

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular matrix structural constituent IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in basement membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    collagen alpha-3(IV) chain
    Names
    alpha 3 type IV collagen

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041765.1 Reference Mmul_10 Primary Assembly

      Range
      114612842..114761672
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028831162.1 → XP_028686995.1  collagen alpha-3(IV) chain isoform X1

      UniProtKB/TrEMBL
      F6ZKG7
      Related
      ENSMMUP00000017402.4, ENSMMUT00000018580.4
      Conserved Domains (2) summary
      pfam01391
      Location:484 → 542
      Collagen; Collagen triple helix repeat (20 copies)
      pfam01413
      Location:1446 → 1552
      C4; C-terminal tandem repeated domain in type 4 procollagen

    2. XM_028831163.1 → XP_028686996.1  collagen alpha-3(IV) chain isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZHG0
      Related
      ENSMMUP00000064610.1, ENSMMUT00000101922.1
      Conserved Domains (3) summary
      pfam01391
      Location:484 → 542
      Collagen; Collagen triple helix repeat (20 copies)
      pfam01413
      Location:1446 → 1552
      C4; C-terminal tandem repeated domain in type 4 procollagen
      cl02467
      Location:1556 → 1585
      C4; C-terminal tandem repeated domain in type 4 procollagen

    RNA

    1. XR_003721446.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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